View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7469_low_1 (Length: 549)
Name: NF7469_low_1
Description: NF7469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7469_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 17 - 535
Target Start/End: Original strand, 21507058 - 21507576
Alignment:
| Q |
17 |
gttttaacattgtttctaattctaagcgtttcatgtttggctcttccatggatcatactcaactagatcatttctcatcacttatctctccttctcatat |
116 |
Q |
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| T |
21507058 |
gttttaacgttgtttctaattctaagcgtttcatgtttggctcttccatggatcatactcaactagatcatttatcatcacttatctctccttctcatat |
21507157 |
T |
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| Q |
117 |
tgatattgtaagtactatattgtcattcttaatttagttaacatctatgattatgtattgatttgtcattatattgttacattttaccatgtttgtgaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21507158 |
tgatattgtaagtactatattgtcattcttaatttagttaacatctatgattatgtattgatttgtcattatattgttacattttaccatgtttgtgaga |
21507257 |
T |
|
| Q |
217 |
aggtactagtacaatattatgtttcatggttttaaattgcggttgtagtttttggctacaatgtgatactttgtatcgcggaaaaatgtggttgatgcgg |
316 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21507258 |
aggtactagtacagtattatgtatcatggttttaaattgcggttgtagtttttggctacaatgtgacactttgtatcgcggaaaaatgtggttgatgcgg |
21507357 |
T |
|
| Q |
317 |
tcgcaattgtgatcacaatattgttgttgtaaaacctctacaatttctgtcaactaataagtgctctaatctaaagtactttttcccttgtccttttctt |
416 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21507358 |
ccgcaattgcgatcacaatattgttgttgtaaaacctctacaatttctgtctactaataagtgctctaatctaaagtactttttcccttgtccttttctt |
21507457 |
T |
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| Q |
417 |
tttgtttgcagaggaaaaagaaaattaacgggttgcaaaagaaagaggaacttgaaaaagaggtatttggattcatatatattttatggaaaaatttcat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21507458 |
tttgtttgcagaggaaaaagaaaattaacgggttgcaaaagaaagaggaacttgaaaaagaggtatttggattcatatatattttatggaaaaatttcat |
21507557 |
T |
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| Q |
517 |
aattaattactacatgagt |
535 |
Q |
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||||||||||||||||||| |
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| T |
21507558 |
aattaattactacatgagt |
21507576 |
T |
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