View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7469_low_12 (Length: 291)
Name: NF7469_low_12
Description: NF7469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7469_low_12 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 129453 - 129180
Alignment:
| Q |
18 |
atatattggcacggtcgtgcgctagttactgacattgggtctgactgttcaaatagtatcacatagggtctgtgtcaaatgttctaccatttgctagaaa |
117 |
Q |
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| T |
129453 |
atatattggcatggtcgtgcgctagttactgacattgggtctgactgctcaaatagtttcacatagggtctgtgtgaaatgttctatcatttgctagaaa |
129354 |
T |
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| Q |
118 |
gaagttactacaaactaaaccgtgttgttttcctgtagtgcatacatatcaactgttagaagattgtctcctactgtcccaagggaactggaagagtata |
217 |
Q |
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| T |
129353 |
gaagttactacaaattaaactgtgttgttttcctgtagtgcatacatatcaactgttagaagattgtctcctactgtcccaggggaactggaagagtata |
129254 |
T |
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| Q |
218 |
ttgctaatgcttactccagcattcgtcaagaagaagcaaagtccaccactccacattcctatacaactatcaga |
291 |
Q |
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| T |
129253 |
ttgctaatgcttactccaacattcgtcaagaagaagcaaagtccaccactccacattcctatacaactatcaga |
129180 |
T |
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Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 57 - 291
Target Start/End: Complemental strand, 44773946 - 44773712
Alignment:
| Q |
57 |
tctgactgttcaaatagtatcacatagggtctgtgtcaaatgttctaccatttgctagaaagaagttactacaaactaaaccgtgttgttttcctgtagt |
156 |
Q |
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| T |
44773946 |
tctgactgctcatatagtttcacatagggtctgtgtcaaatgttctgtcacttgctagaaagaagttgctagaaactaaaccgtgttgctttcctgtagt |
44773847 |
T |
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| Q |
157 |
gcatacatatcaactgttagaagattgtctcctactgtcccaagggaactggaagagtatattgctaatgcttactccagcattcgtcaagaagaagcaa |
256 |
Q |
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| T |
44773846 |
gcatacatatcaactgctagaagattgtctccaactgtcccaagggaactggaagagtatattgctagtgcttactccagcattcgtcaagaagaagcaa |
44773747 |
T |
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| Q |
257 |
agtccaccactccacattcctatacaactatcaga |
291 |
Q |
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| T |
44773746 |
agtccaccactccacattcctatacaactatcaga |
44773712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 11759643 - 11759679
Alignment:
| Q |
18 |
atatattggcacggtcgtgcgctagttactgacattg |
54 |
Q |
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| T |
11759643 |
atatattggcacggtcgtgcgctagttgctgacattg |
11759679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 7672496 - 7672464
Alignment:
| Q |
19 |
tatattggcacggtcgtgcgctagttactgaca |
51 |
Q |
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| T |
7672496 |
tatattggcgcggtcgtgcgctagttactgaca |
7672464 |
T |
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