View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7469_low_4 (Length: 457)
Name: NF7469_low_4
Description: NF7469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7469_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 46009015 - 46008566
Alignment:
| Q |
1 |
agtggttatgaatgattcttcttgcttgtttctgattgatgatgatttctgaggaggcttgtttctgtttatccgtggactcaaattcccatgtgctgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46009015 |
agtggttatgaatgattcttcttgcttgtttctgattgatgatgatttctgaggaggcttgtttctgtttatccgtggactcaaattcccatgtgctgtt |
46008916 |
T |
|
| Q |
101 |
ttcttgcattttgggaaagattttttgtcctccttctctgacattgcttgtgtttgtggctttgttgaaactcttgaaacttgtgcttcaatgttgactg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46008915 |
ttcttgcattttgggaaagattttttgtcctccttctctgacattgcttgtgtttgtggctttgttgaaactcttgaaacttgtgcttcaatgttgactg |
46008816 |
T |
|
| Q |
201 |
caggtggtggtgatgattgttttagtacttgatgtgtattttggtctcttggagtagttgttggtgaatgtttatggttgttatcattgaatctgctgag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46008815 |
caggtggtggtgatgattgttttagtacttgatgtgtattttggtctcttggagtagttgttggtgaatgtttatggttgttatcattgaatctgctgag |
46008716 |
T |
|
| Q |
301 |
tcttggggaatgagatgtgtttgttgagggtacttttccttggtttgattcatctaatggtttaagagctttcttgaatttgatttgagcaacaaaatct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46008715 |
tcttggggaatgagatgtgtttgttgagggtacttttccttgatttgattcatctaatggtttaagagctttcttgaatttgatttgagcaacaaaatct |
46008616 |
T |
|
| Q |
401 |
tctttcgctttttcttgttctctgtttttcactgtgttggtgatgtccat |
450 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46008615 |
tctttcactttttcttgttctctgtttttcactgtgttggtgatgtccat |
46008566 |
T |
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