View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7469_low_5 (Length: 434)
Name: NF7469_low_5
Description: NF7469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7469_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 32853756 - 32854181
Alignment:
| Q |
1 |
tagtacatctaaagcgacaatcttgtgattcatgtccagattttttgcaaa-taaagcaataagaattagaattacctcgtatcctttctcctcctcttc |
99 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853756 |
tagtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaaataaagcaataagaattagaattacctcgtatcctttctcctcctcttc |
32853855 |
T |
|
| Q |
100 |
ctttgtatccataatgccttccatgacctctgttggaaggatgtccacgaaatgagtccccacttccttcttgccgcgagttggaactccggatattcat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32853856 |
ctttgtatccataatgccttccatgacctctgttggaaggatgtccacgaaatgagtccccacttccttcttgtcgcgagttggaactccggatattcat |
32853955 |
T |
|
| Q |
200 |
ctttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaacccatcaattcatattgtgagagtttt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32853956 |
ctttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaacccatcagttcatattgtgagagtttt |
32854055 |
T |
|
| Q |
300 |
gtgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaaccactttcctttctggaacttgtt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32854056 |
gtgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaaccactttcctttctggaacttgtt |
32854155 |
T |
|
| Q |
400 |
ctccacaacttttaatttgatgtcca |
425 |
Q |
| |
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||||||||||||||||||||| |||| |
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| T |
32854156 |
ctccacaacttttaatttgatttcca |
32854181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 37176892 - 37177316
Alignment:
| Q |
1 |
tagtacatctaaagcgacaatcttgtgattcatgtccagattttttgcaaataaagcaataagaattagaattacctcgtatcctttctcctcctcttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37176892 |
tagtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaataaagcaataagaattagaattacctcgtatcctttctcctcctcttcc |
37176991 |
T |
|
| Q |
101 |
tttgtatccataatgccttccatgacctctgttggaaggatgtccacgaaatgagtccccacttccttcttgccgcgagttggaactccggatattcatc |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37176992 |
tttgtatccataatgccttccatgacctatgttggaaggatgtccacgaaatgagtccccacttccttcttgtcgcgagttggaactccggatattcatc |
37177091 |
T |
|
| Q |
201 |
tttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaacccatcaattcatattgtgagagttttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37177092 |
tttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaacccatcaatttatattgtgagagttttg |
37177191 |
T |
|
| Q |
301 |
tgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaaccactttcctttctggaacttgttc |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
37177192 |
tgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaaccactttcttttctggaacttgttc |
37177291 |
T |
|
| Q |
401 |
tccacaacttttaatttgatgtcca |
425 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
37177292 |
tccacaacttttaatttgatttcca |
37177316 |
T |
|
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