View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7469_low_7 (Length: 418)

Name: NF7469_low_7
Description: NF7469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7469_low_7
NF7469_low_7
[»] chr6 (11 HSPs)
chr6 (19-400)||(176040-176421)
chr6 (177-361)||(1470926-1471116)
chr6 (177-361)||(1459544-1459734)
chr6 (177-378)||(7564737-7564944)
chr6 (177-367)||(370782-370978)
chr6 (249-376)||(1442096-1442223)
chr6 (241-366)||(1453838-1453963)
chr6 (241-366)||(1465530-1465655)
chr6 (19-125)||(7564960-7565066)
chr6 (312-361)||(9819832-9819881)
chr6 (313-361)||(9703889-9703937)
[»] chr7 (2 HSPs)
chr7 (177-366)||(3926917-3927112)
chr7 (19-122)||(3926795-3926898)
[»] chr4 (1 HSPs)
chr4 (273-374)||(55419742-55419843)
[»] chr3 (3 HSPs)
chr3 (324-372)||(2442050-2442098)
chr3 (317-374)||(4142124-4142181)
chr3 (317-369)||(4157939-4157991)
[»] chr2 (3 HSPs)
chr2 (324-367)||(6538845-6538888)
chr2 (317-366)||(7160752-7160801)
chr2 (317-366)||(7168688-7168737)
[»] scaffold0044 (1 HSPs)
scaffold0044 (307-361)||(89137-89191)
[»] chr5 (2 HSPs)
chr5 (324-369)||(23766857-23766902)
chr5 (324-369)||(23816705-23816750)


Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Original strand, 176040 - 176421
Alignment:
Q  19 tggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggcaaatttgtaagtggcagcgttcattgggccattgaagatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  176040 tggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggcaaatttgtaagtggcagcgttcattgggccattgaagatc 176139  T
Q  119 aaaataaccgattcctaaaatcacaagatccagatgaccactcttcatggtcatggcacattctttctcttcatttaggaaatgagtcgtatcgggagat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  176140 aaaataaccgattcctaaaatcacaagatccagatgaccactcttcatggtcatggcacattctttctcttcatttaggaaatgagtcgtatcgggagat 176239  T
Q  219 ttcccagcccgattatggtctacctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  176240 ttcccagcccgattatggtctacctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatt 176339  T
Q  319 tggcgtatgaacgattatggaaataaagattcttggactaaatcgttcactcttccattcgccgaattcgttggtcttgatg 400  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  176340 tggcgtatgaatgattatggaaataaagattcttggactaaattgttcactcttccatttgccgaattcgttggtcttgatg 176421  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 361
Target Start/End: Complemental strand, 1471116 - 1470926
Alignment:
Q  177 cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtcta------cctctgcataacttcagcttgggggtttct 270  Q
    ||||||||||||| |||||||||| ||||| ||||  |||||||  ||||| ||||||| | ||      ||||||| |||||| |||||||||||||||    
T  1471116 cattctttctcttaatttaggaaacgagtcttatcaagagattttacagcctgattatgatttagatgaacctctgcgtaactttagcttgggggtttct 1471017  T
Q  271 agggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaat 361  Q
    ||||||| | ||||| |||||||||| ||| || |||||||||||||||||  |||||| |||||||||||||||||||||||| ||||||    
T  1471016 agggattacttatgcatccttgctcataccaaatcttttttggatatttgggttatgaaagattatggaaataaagattcttggtctaaat 1470926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 177 - 361
Target Start/End: Complemental strand, 1459734 - 1459544
Alignment:
Q  177 cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtcta------cctctgcataacttcagcttgggggtttct 270  Q
    ||||||||||||| |||||||||| ||||| ||||  |||||||  |||||  |||||||| ||      |||||||||||||| ||||||||||||| |    
T  1459734 cattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttat 1459635  T
Q  271 agggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaat 361  Q
    ||||||| | |||||||||||||||| ||  || |||||||||||||||||  |||||| |||| |||||||||||| |||||||||||||    
T  1459634 agggattacttatgcgtccttgctcatacaaaatcttttttggatatttgggttatgaaagattttggaaataaagaatcttggactaaat 1459544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 177 - 378
Target Start/End: Complemental strand, 7564944 - 7564737
Alignment:
Q  177 cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtct------acctctgcataacttcagcttgggggtttct 270  Q
    ||||||||| ||| ||||||| || ||||| ||||  |||||||  ||||| ||||||||| |      || ||||| | |||| ||||| ||||||| |    
T  7564944 cattctttcccttgatttaggtaacgagtcttatcaagagattttgcagccagattatggtgttcaccaacgtctgcgttactttagcttaggggtttgt 7564845  T
Q  271 agggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaatcgttcactc 370  Q
    ||||||||| |||| ||||||||||||||   |||||||||| ||||||||  |||||| ||||||||||| || |||||||||||||||| ||||| |     
T  7564844 agggattgcttatgggtccttgctcacactacaacttttttgaatatttgggttatgaaggattatggaaacaaggattcttggactaaattgttcagtg 7564745  T
Q  371 ttccattc 378  Q
    ||||||||    
T  7564744 ttccattc 7564737  T

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Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 177 - 367
Target Start/End: Complemental strand, 370978 - 370782
Alignment:
Q  177 cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtcta------cctctgcataacttcagcttgggggtttct 270  Q
    ||||||||||||| |||||| ||| ||||  ||||  |||||||| ||||| ||||||||||||      ||||||| | | |||  ||||| |||||||    
T  370978 cattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttct 370879  T
Q  271 agggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaatcgttca 367  Q
    ||||||||| ||||| |||||||||| ||  |||||||| |||   |||||  ||||||  |||||||||||||||||||||||||||||| |||||    
T  370878 agggattgcttatgcatccttgctcagactaaaacttttatgggcgtttgggttatgaagaattatggaaataaagattcttggactaaattgttca 370782  T

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Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 249 - 376
Target Start/End: Complemental strand, 1442223 - 1442096
Alignment:
Q  249 taacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagat 348  Q
    |||||| |||||||||||||| |  |||||| ||||| |||||||||| | || |||| |||||||||  |||  |||||| |||||||||| |||||||    
T  1442223 taacttgagcttgggggtttccaatgattgcttatgcatccttgctcaaaacggaactattttggatacatgggttatgaaggattatggaattaaagat 1442124  T
Q  349 tcttggactaaatcgttcactcttccat 376  Q
    ||||||||||||| ||||||| ||||||    
T  1442123 tcttggactaaattgttcactgttccat 1442096  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 366
Target Start/End: Complemental strand, 1453963 - 1453838
Alignment:
Q  241 cctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaa 340  Q
    ||||||||| |||| |||||||| || |||||||||||| ||||| ||||||||||| |  |    | ||||||||| |||  ||||||  |||||||||    
T  1453963 cctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttggatatctgggttatgaagtattatggaa 1453864  T
Q  341 ataaagattcttggactaaatcgttc 366  Q
    ||||||| ||||||| ||||| ||||    
T  1453863 ataaagactcttggaataaattgttc 1453838  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 366
Target Start/End: Complemental strand, 1465655 - 1465530
Alignment:
Q  241 cctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaa 340  Q
    ||||||||| |||| |||||||| || |||||||||||| ||||| ||||||||||| |  |    | ||||||||| |||  ||||||  |||||||||    
T  1465655 cctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttggatatctgggttatgaagtattatggaa 1465556  T
Q  341 ataaagattcttggactaaatcgttc 366  Q
    ||||||| ||||||| ||||| ||||    
T  1465555 ataaagactcttggaataaattgttc 1465530  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 7565066 - 7564960
Alignment:
Q  19 tggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggcaaatttgtaagtggcagcgttcattgggccattgaagatc 118  Q
    ||||||||||||||||||||||||||  ||  || |||| |||| |||||   |||||| |||||||||||||||  | ||||||||| |||  ||||||    
T  7565066 tggagaaggattccagacttcccttctgaaaacaagggtgtacctgaaggacgtgttgggaaatttgtaagtggcgccattcattgggtcataaaagatc 7564967  T
Q  119 aaaataa 125  Q
    || ||||    
T  7564966 aagataa 7564960  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 9819881 - 9819832
Alignment:
Q  312 ggatatttggcgtatgaacgattatggaaataaagattcttggactaaat 361  Q
    ||||||||||| |||||| || |||||||||| ||| |||||||||||||    
T  9819881 ggatatttggcttatgaaggaatatggaaatagagactcttggactaaat 9819832  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 9703937 - 9703889
Alignment:
Q  313 gatatttggcgtatgaacgattatggaaataaagattcttggactaaat 361  Q
    |||||||||| |||||| || |||||||||| ||||| |||||||||||    
T  9703937 gatatttggcttatgaaggaatatggaaatagagatttttggactaaat 9703889  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 177 - 366
Target Start/End: Original strand, 3926917 - 3927112
Alignment:
Q  177 cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtcta------cctctgcataacttcagcttgggggtttct 270  Q
    ||||||||||||| |||||||||| ||||| ||||  |||||||| | |||||||| ||||||       ||  | |||| ||||| ||| |||||||||    
T  3926917 cattctttctcttgatttaggaaacgagtcctatcaagagatttcacggcccgattttggtcttgatgatccggttcatatcttcaccttaggggtttct 3927016  T
Q  271 agggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaatcgttc 366  Q
    | ||||||| | || ||||||| | |||| |||||||| |||| |||||||  |||||| ||||||||||||||| ||||||||||||||| ||||    
T  3927017 aaggattgcttgtgtgtccttgtttacactgaaactttgttgggtatttgggttatgaaggattatggaaataaaaattcttggactaaattgttc 3927112  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 3926795 - 3926898
Alignment:
Q  19 tggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggcaaatttgtaagtggcagcgttcattgggccattgaagatc 118  Q
    ||||| ||||||||| ||||||||||  |  |||||||| ||||| | ||| ||||||| ||||||||||||||||   || |||||||||| ||| |||    
T  3926795 tggaggaggattccaaacttcccttcaaatatcatgggtttacccaatgggtatgttgggaaatttgtaagtggcacaattaattgggccatagaaaatc 3926894  T
Q  119 aaaa 122  Q
    ||||    
T  3926895 aaaa 3926898  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 273 - 374
Target Start/End: Original strand, 55419742 - 55419843
Alignment:
Q  273 ggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaatcgttcactctt 372  Q
    ||||||| |||||||| ||||||||||| |  ||||||||||||| |||| |||||| | ||||||||||||||||||||||||||||| ||| ||| ||    
T  55419742 ggattgcttatgcgtcgttgctcacaccaattcttttttggatatctggcttatgaaggtttatggaaataaagattcttggactaaattgtttactatt 55419841  T
Q  373 cc 374  Q
    ||    
T  55419842 cc 55419843  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 372
Target Start/End: Original strand, 2442050 - 2442098
Alignment:
Q  324 tatgaacgattatggaaataaagattcttggactaaatcgttcactctt 372  Q
    |||||| || |||||||||||||||||||||||||||| ||||||||||    
T  2442050 tatgaaggagtatggaaataaagattcttggactaaattgttcactctt 2442098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 4142181 - 4142124
Alignment:
Q  317 tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttcactcttcc 374  Q
    |||||| |||||| || |||||||||||||| ||||||||||||| ||||||| ||||    
T  4142181 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcc 4142124  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 4157991 - 4157939
Alignment:
Q  317 tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttcact 369  Q
    |||||| |||||| || |||||||||||||| ||||||||||||| |||||||    
T  4157991 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcact 4157939  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 367
Target Start/End: Original strand, 6538845 - 6538888
Alignment:
Q  324 tatgaacgattatggaaataaagattcttggactaaatcgttca 367  Q
    |||||| || |||||||||||||||||||||||||||| |||||    
T  6538845 tatgaaggagtatggaaataaagattcttggactaaattgttca 6538888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 7160801 - 7160752
Alignment:
Q  317 tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttc 366  Q
    |||||| |||||| || ||||||||||| |||||||||||||||| ||||    
T  7160801 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 7160752  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 7168737 - 7168688
Alignment:
Q  317 tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttc 366  Q
    |||||| |||||| || ||||||||||| |||||||||||||||| ||||    
T  7168737 tttggcttatgaaggaatatggaaataacgattcttggactaaattgttc 7168688  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 89137 - 89191
Alignment:
Q  307 tttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaat 361  Q
    ||||| |||||||||  |||||| || |||||||||||||| |||||||||||||    
T  89137 ttttttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaat 89191  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 23766902 - 23766857
Alignment:
Q  324 tatgaacgattatggaaataaagattcttggactaaatcgttcact 369  Q
    |||||| || |||||||||||||| ||||||||||||| |||||||    
T  23766902 tatgaaagaatatggaaataaagagtcttggactaaattgttcact 23766857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 23816750 - 23816705
Alignment:
Q  324 tatgaacgattatggaaataaagattcttggactaaatcgttcact 369  Q
    |||||| || |||||||||||||| ||||||||||||| |||||||    
T  23816750 tatgaaagaatatggaaataaagagtcttggactaaattgttcact 23816705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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