View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7469_low_9 (Length: 365)
Name: NF7469_low_9
Description: NF7469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7469_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 41765287 - 41764919
Alignment:
| Q |
1 |
acattccttccggaccaagtggctactcttctggaaatgatgctggttgaaatgctgatgtcaaaggtggaagacaagcattcatggtaaagttcannnn |
100 |
Q |
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| T |
41765287 |
acattcctactggaccaagtgactactcttctggaaatgatgctggtggaaatgctgatgtcaaaggtggaagacaagcattcatggtaaagttcttttt |
41765188 |
T |
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| Q |
101 |
nnnnnnnnn---acagtttgatgttttgagaatttttcatatgccaggttggatcctcttgtgtattatgaatcacaaaaatgacggtggcatgagaaaa |
197 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41765187 |
ttttttttttttacagtt-gatgttttgagaatttttcatatgccaggttggatcctcttgtgtattatgaatcacaaaaatgacggtggcatgagaaaa |
41765089 |
T |
|
| Q |
198 |
aatatggagaaatgagtgttataatagagggattttgtgtgaggcaatccaaatatgtttctc-------------aatttgtgcaattgatttaagctt |
284 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41765088 |
aatatggagaaattagtgttataatagagggattttgtgtgaggcaatccaaatatgtttctcaattgatattctcaatttgtgcaattgatttaagctt |
41764989 |
T |
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| Q |
285 |
tggctattgtacagttgttgaactcttctgtttagaacatgttcttatttttaacgtgtttattgatatt |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41764988 |
tggctattgtacagttgttgaactcttctgtttagaacatgttcttatttttaacgtgttcattgatatt |
41764919 |
T |
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