View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7470_high_16 (Length: 246)

Name: NF7470_high_16
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7470_high_16
NF7470_high_16
[»] chr6 (2 HSPs)
chr6 (1-232)||(27876563-27876794)
chr6 (1-173)||(8481612-8481784)
[»] chr4 (4 HSPs)
chr4 (1-232)||(48699675-48699906)
chr4 (1-232)||(42268135-42268366)
chr4 (1-232)||(30948037-30948268)
chr4 (1-197)||(2001109-2001305)
[»] chr3 (3 HSPs)
chr3 (1-232)||(5821129-5821360)
chr3 (1-232)||(2815117-2815348)
chr3 (1-226)||(42587183-42587408)
[»] chr8 (2 HSPs)
chr8 (1-232)||(9441946-9442177)
chr8 (1-226)||(24596348-24596573)
[»] chr5 (2 HSPs)
chr5 (1-232)||(41720642-41720873)
chr5 (1-232)||(34354242-34354473)
[»] chr2 (1 HSPs)
chr2 (1-232)||(827711-827942)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 27876794 - 27876563
Alignment:
Q  1 aatggtgtggcagagcggatgaatagaactctcgtagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtga 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27876794 aatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcagtga 27876695  T
Q  101 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27876694 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 27876595  T
Q  201 acaagtgtttggttgtcctgtgtacgtgatgt 232  Q
     || ||||||||||||||||||||||||||||    
T  27876594 gcatgtgtttggttgtcctgtgtacgtgatgt 27876563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 8481784 - 8481612
Alignment:
Q  1 aatggtgtggcagagcggatgaatagaactctcgtagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtga 100  Q
    |||||| | ||||||||  |||||| ||||||| |||| | |||||||| ||||| || |||||| |||||||||||||| || | |||| |||| | ||    
T  8481784 aatggtatagcagagcgattgaataaaactctcctagataaaacaagagttatgcagagaacagcaggaatggccaagtcttttttggcaaaagctgcga 8481685  T
Q  101 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaa 173  Q
    |||  || |||||||| || ||||| || |||| ||| || |||| |||||| |||||||||||||| |||||    
T  8481684 aaatggcatgttatgtgatcaatcgatctccataaactgcaattggtttgaaaacaccgatggagatttggaa 8481612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 48699906 - 48699675
Alignment:
Q  1 aatggtgtggcagagcggatgaatagaactctcgtagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtga 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48699906 aatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcagtga 48699807  T
Q  101 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48699806 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 48699707  T
Q  201 acaagtgtttggttgtcctgtgtacgtgatgt 232  Q
     || ||||||||||||||||||||||||||||    
T  48699706 gcatgtgtttggttgtcctgtgtacgtgatgt 48699675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 42268135 - 42268366
Alignment:
Q  1 aatggtgtggcagagcggatgaatagaactctcgtagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtga 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42268135 aatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcagtga 42268234  T
Q  101 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42268235 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 42268334  T
Q  201 acaagtgtttggttgtcctgtgtacgtgatgt 232  Q
     || |||||||||||||||||||| |||||||    
T  42268335 gcatgtgtttggttgtcctgtgtatgtgatgt 42268366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 30948268 - 30948037
Alignment:
Q  1 aatggtgtggcagagcggatgaatagaactctcgtagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtga 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  30948268 aatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcggaaatggccaagtcgttctgggcagaagcagtga 30948169  T
Q  101 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30948168 aaaccgcctgttatgtaataaatcgctcaccatcaacgacgattgatttgaagacaccaatggagatgtggaaaggaaagccagtagattattcttctct 30948069  T
Q  201 acaagtgtttggttgtcctgtgtacgtgatgt 232  Q
     || || |||||||||||||||||||||||||    
T  30948068 gcatgtttttggttgtcctgtgtacgtgatgt 30948037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 2001109 - 2001305
Alignment:
Q  1 aatggtgtggcagagcggatgaatagaactctcgtagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtga 100  Q
    |||||||| |||||||||||||||| ||||||| || | ||||||||||| ||| ||| |||| | ||| |||| ||||| |||||||||||||| ||||    
T  2001109 aatggtgtagcagagcggatgaatataactctcctatatagaacaagagccatgttgagaacaacaggagtggctaagtctttctgggcagaagctgtga 2001208  T
Q  101 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttc 197  Q
    |||| |||| ||| || || ||||| || |||||||| || |||| |||||| ||||| |||||||| ||||| |||||||||   |||||||||||    
T  2001209 aaactgcctattacgtgatcaatcgatctccatcaaccgcaattggtttgaaaacaccaatggagatttggaacggaaagccacctgattattcttc 2001305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 5821360 - 5821129
Alignment:
Q  1 aatggtgtggcagagcggatgaatagaactctcgtagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtga 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5821360 aatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcagtga 5821261  T
Q  101 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5821260 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 5821161  T
Q  201 acaagtgtttggttgtcctgtgtacgtgatgt 232  Q
     || |||||||||||||||||||| |||||||    
T  5821160 gcatgtgtttggttgtcctgtgtatgtgatgt 5821129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2815348 - 2815117
Alignment:
Q  1 aatggtgtggcagagcggatgaatagaactctcgtagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtga 100  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2815348 aatggtgtggcagagcggatgaatataactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcagtga 2815249  T
Q  101 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 200  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  2815248 aaaccgcctgttatgtaataaatcgctcaccatcaacgttgattgatttgaagactcctatggagatgtggaaaggaaagccagtagattattcttctct 2815149  T
Q  201 acaagtgtttggttgtcctgtgtacgtgatgt 232  Q
    ||| |||||||||||||||||||| |||||||    
T  2815148 acatgtgtttggttgtcctgtgtatgtgatgt 2815117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 42587183 - 42587408
Alignment:
Q  1 aatggtgtggcagagcggatgaatagaactctcgtagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtga 100  Q
    |||||||| |||||||||||||||||||||||| |||| | ||||||||| ||| ||| |||||| | | |||| ||||| |||||||||||||| ||||    
T  42587183 aatggtgtagcagagcggatgaatagaactctcttagataaaacaagagccatgttgagaacagcagtagtggctaagtctttctgggcagaagctgtga 42587282  T
Q  101 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 200  Q
    ||||||||||||| || || ||||| || |||||||| || |||| |||| | ||||| |||||||| ||||| |||||||||   |||||||||||  |    
T  42587283 aaaccgcctgttacgtgatcaatcgatctccatcaaccgcaattggtttgtaaacaccaatggagatttggaacggaaagccacctgattattcttcctt 42587382  T
Q  201 acaagtgtttggttgtcctgtgtacg 226  Q
    ||| ||||| || ||| |||||||||    
T  42587383 acatgtgttcggatgtactgtgtacg 42587408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 9442177 - 9441946
Alignment:
Q  1 aatggtgtggcagagcggatgaatagaactctcgtagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtga 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9442177 aatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcagtga 9442078  T
Q  101 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9442077 aaaccgcctgttatgtaataaatcgctcaccatcaacggtgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 9441978  T
Q  201 acaagtgtttggttgtcctgtgtacgtgatgt 232  Q
     || |||||||||||||||||||| |||||||    
T  9441977 gcatgtgtttggttgtcctgtgtatgtgatgt 9441946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 24596573 - 24596348
Alignment:
Q  1 aatggtgtggcagagcggatgaatagaactctcgtagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtga 100  Q
    |||||||| |||||||||||||||||||||||| || | | || |||||| ||| ||| ||||||   | |||| ||||| |||||||||||||| ||||    
T  24596573 aatggtgtagcagagcggatgaatagaactctcttaaataaaaaaagagccatgttgagaacagcaatagtggctaagtctttctgggcagaagctgtga 24596474  T
Q  101 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 200  Q
    ||||||||| ||| || || ||||| ||  ||||||| || |||| |||||| ||||| |||||||| ||||| |||||||||   |||||||||||  |    
T  24596473 aaaccgcctattacgtgatcaatcgatctacatcaaccgcaattggtttgaaaacaccaatggagatttggaacggaaagccacctgattattcttcctt 24596374  T
Q  201 acaagtgtttggttgtcctgtgtacg 226  Q
    ||| ||||| || ||| |||||||||    
T  24596373 acatgtgttcggatgtactgtgtacg 24596348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 41720642 - 41720873
Alignment:
Q  1 aatggtgtggcagagcggatgaatagaactctcgtagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtga 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41720642 aatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcagtga 41720741  T
Q  101 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41720742 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccaatggagatgtggaaaggaaagccagtagattattcttctct 41720841  T
Q  201 acaagtgtttggttgtcctgtgtacgtgatgt 232  Q
     || || |||||||||||||||||||||||||    
T  41720842 gcatgtttttggttgtcctgtgtacgtgatgt 41720873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 34354242 - 34354473
Alignment:
Q  1 aatggtgtggcagagcggatgaatagaactctcgtagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtga 100  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  34354242 aatggtgcggcagagcggatgaatagaactctcctagaaagaacaagagctatgctgaaaacagcaggaatggccaagtcgttctgggcagaagcagtga 34354341  T
Q  101 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 200  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34354342 aaaccgcctgttatgtaataaatcgctcaccatcaacgacaattgatttgaagacaccaatggagatgtggaaaggaaagccagtagattattcttctct 34354441  T
Q  201 acaagtgtttggttgtcctgtgtacgtgatgt 232  Q
    ||| ||||||||||||||||||||||||||||    
T  34354442 acatgtgtttggttgtcctgtgtacgtgatgt 34354473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 827711 - 827942
Alignment:
Q  1 aatggtgtggcagagcggatgaatagaactctcgtagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtga 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  827711 aatggtgtggcagagcggatgaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagtcgttctgtgcagaagcagtga 827810  T
Q  101 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  827811 aaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctct 827910  T
Q  201 acaagtgtttggttgtcctgtgtacgtgatgt 232  Q
     || ||||||||||||||||||||||||||||    
T  827911 gcatgtgtttggttgtcctgtgtacgtgatgt 827942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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