View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7470_high_18 (Length: 236)
Name: NF7470_high_18
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7470_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 5022266 - 5022122
Alignment:
| Q |
74 |
gaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaagatggattattttccatcttttactatgagtgcctatcaattatt |
173 |
Q |
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| T |
5022266 |
gaatgcacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaagatggattattttccatcttttactatgagtgcctatcaattatt |
5022167 |
T |
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| Q |
174 |
gttggtgctattataccgtgttttgctgcttttgggagtgcgcgg |
218 |
Q |
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| T |
5022166 |
gttggtgctattatactgtgttttgctgcttttgggagtgcgcgg |
5022122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 23712275 - 23712231
Alignment:
| Q |
130 |
atggattattttccatcttttactatgagtgcctatcaattattg |
174 |
Q |
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| T |
23712275 |
atggattattttccatattttactatgagtgcccatcaattattg |
23712231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 5022277 - 5022248
Alignment:
| Q |
18 |
agaaaccttaagaatgcacaataccagcag |
47 |
Q |
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| T |
5022277 |
agaaaccttaagaatgcacaataccagcag |
5022248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 41654553 - 41654637
Alignment:
| Q |
46 |
agagtgtattgaaacttgtgagattagtgaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga |
130 |
Q |
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| T |
41654553 |
agagtgtattgaaacttgtgagataaatggatacacaataccagctggaacacaagtgtttgtgaatgcatgggcaattggaaga |
41654637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 41647018 - 41647102
Alignment:
| Q |
46 |
agagtgtattgaaacttgtgagattagtgaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga |
130 |
Q |
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| T |
41647018 |
agagtgtattgaaacttgtgagataaatggatacacaataccagctggaacacaagtgtttgtgaattcatgggcaattggaaga |
41647102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 41620970 - 41620886
Alignment:
| Q |
46 |
agagtgtattgaaacttgtgagattagtgaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga |
130 |
Q |
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| T |
41620970 |
agagtgtgctgaaacttgtgagataaatggatacacaataccgggcggaacacacgtgttagtgaatacatgggcaattgcaaga |
41620886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 2433488 - 2433572
Alignment:
| Q |
46 |
agagtgtattgaaacttgtgagattagtgaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga |
130 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||| | ||||||||||| ||||||||| ||||||||| |||||| |
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| T |
2433488 |
agagtgtattgaaacttgtgagattaatggatacacaataccatctggaacacaagtgtttgtgaatggatgggcaataggaaga |
2433572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 12438498 - 12438414
Alignment:
| Q |
46 |
agagtgtattgaaacttgtgagattagtgaatacacaataccagcaggaacacaagttcttgtgaatgcatgggcaattggaaga |
130 |
Q |
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| T |
12438498 |
agagtgtattgaaaattgtgtggttaacggatacataataccagccggaacacaagtgcttgtgaatgcatgggcaattggaaga |
12438414 |
T |
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