View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7470_high_6 (Length: 519)

Name: NF7470_high_6
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7470_high_6
NF7470_high_6
[»] chr3 (1 HSPs)
chr3 (19-504)||(6406983-6407468)
[»] chr4 (6 HSPs)
chr4 (189-504)||(40112935-40113250)
chr4 (19-193)||(40094462-40094636)
chr4 (190-293)||(2662538-2662641)
chr4 (400-464)||(9004961-9005025)
chr4 (205-266)||(9004766-9004827)
chr4 (366-454)||(2662377-2662465)
[»] chr1 (1 HSPs)
chr1 (118-451)||(653990-654322)
[»] chr6 (2 HSPs)
chr6 (139-259)||(3690402-3690522)
chr6 (28-68)||(3690291-3690331)
[»] chr5 (4 HSPs)
chr5 (139-266)||(32074058-32074185)
chr5 (157-293)||(3019605-3019741)
chr5 (366-467)||(3019431-3019532)
chr5 (28-68)||(32074256-32074296)
[»] chr2 (3 HSPs)
chr2 (139-266)||(28083395-28083522)
chr2 (205-266)||(1109102-1109163)
chr2 (28-68)||(28083284-28083324)


Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Complemental strand, 6407468 - 6406983
Alignment:
Q  19 agaactgggtttgagcagagatatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6407468 agaactgggtttgagcagagatatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaa 6407369  T
Q  119 gccacatgagttcaacagatgcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaatagg 218  Q
    |||||||||||||| |||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6407368 gccacatgagttcagcagatgtagtggctacagcacggtattcagcctcagttgatgatcgtgctacagtacgttgtttttgtgatagccaagaaatagg 6407269  T
Q  219 attacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcatctgtaaaggcaagaagattgaatgaggat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6407268 attacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcatctgtaaaggcaagaagattgaatgaggat 6407169  T
Q  319 ggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcatgaatt 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6407168 ggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcaagaatt 6407069  T
Q  419 gggagagcttgttgattgcaaatgagagatcaggccgtgtcaggttgagatactgaagggagccaagaatttttctgtagtgtgtg 504  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6407068 gggagagcttgttgattgcaaatgagagatcaggtcgtgtcaggttgagatactgaagggagccaagaatttttctgtagtgtgtg 6406983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 189 - 504
Target Start/End: Original strand, 40112935 - 40113250
Alignment:
Q  189 acgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgca 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40112935 acgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgca 40113034  T
Q  289 tctgtaaaggcaagaagattgaatgaggatggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgctttaaatgttgaa 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40113035 tctgtaaaggcaagaagattgaatgaggatggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgctttaaatgttgaa 40113134  T
Q  389 gatgaagggatgtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcaggttgagatactgaagggagccaagaat 488  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40113135 gatgaagggatataggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcagattgagatactgaagggagccaagaat 40113234  T
Q  489 ttttctgtagtgtgtg 504  Q
    ||||||||||||||||    
T  40113235 ttttctgtagtgtgtg 40113250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 40094462 - 40094636
Alignment:
Q  19 agaactgggtttgagcagagatatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaa 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40094462 agaactgggtttgagcagagacatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaa 40094561  T
Q  119 gccacatgagttcaacagatgcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgtt 193  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40094562 gccacgtgagttcagcagatgcagtggctacagcacggtattcagcctcggttgatgatcgtgctacagtacgtt 40094636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 293
Target Start/End: Complemental strand, 2662641 - 2662538
Alignment:
Q  190 cgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcat 289  Q
    |||||||| | ||| ||||||||||||||||||||||||| | | || |||||||| ||||| || || |||||||| ||||| || ||||| || ||||    
T  2662641 cgttgtttccttgagagccaagaaataggattacctccaagatatattagatatgcagatgtggaagtacggtcatcgatattgccaccccaatcagcat 2662542  T
Q  290 ctgt 293  Q
    ||||    
T  2662541 ctgt 2662538  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 464
Target Start/End: Original strand, 9004961 - 9005025
Alignment:
Q  400 gtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcaggtt 464  Q
    |||||||| ||||||||||| ||||| |||||||  |||||||||| ||| |||||||| |||||    
T  9004961 gtaggtttgtgcatgaattgagagagtttgttgacagcaaatgagacatcgggccgtgtgaggtt 9005025  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 9004766 - 9004827
Alignment:
Q  205 agccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatc 266  Q
    |||||||| ||||||||||| |||||||| |||||||| ||||| || || ||||| |||||    
T  9004766 agccaagagataggattaccaccaaaaaatataagatacgctgaagtggatgtgcgatcatc 9004827  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 454
Target Start/End: Complemental strand, 2662465 - 2662377
Alignment:
Q  366 aagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggcc 454  Q
    ||||||||| || | |||||||| ||| ||   |||||| |||||||||||||| ||||| |||||||| ||||| || || |||||||    
T  2662465 aagtagccgtttgagatgttgaaaatggagacttgtaggcttatgcatgaattgagagagtttgttgatggcaaaggaaaggtcaggcc 2662377  T

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Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 118 - 451
Target Start/End: Original strand, 653990 - 654322
Alignment:
Q  118 agccacatgagttcaacagatgcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaatag 217  Q
    |||||||  |||||| ||| ||||||||| ||  |||||||||||||||| ||||| || ||||||||||| |||||||| ||||||| ||||||  | |    
T  653990 agccacactagttcagcagttgcagtggccactgcacggtattcagcctcagttgaaga-cgtgctacagtgcgttgtttgcgtgataaccaagaggtgg 654088  T
Q  218 gattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcatctgtaaaggcaagaagattgaatgagga 317  Q
    | |||| | ||| ||| || ||||||||  |||| || ||||| || |||||||| || |||||||||||||| || || |||  ||||| ||| || ||    
T  654089 ggttactttcaagaaaaatgagatatgcaaatgtggatgtgcgatcttccatattgccaccccagtctgcatccgtgaaagcataaagatggaaggatga 654188  T
Q  318 tggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcatgaat 417  Q
    ||||| ||| |  |  |||||||| ||||||||  |||| |  || |||||||| | ||||| |||||| |||||||| ||||| ||||| | |||||||    
T  654189 tggttgcttcagaaaaatgccaaaattaatggtagcctttagataacgaagtagtctctttagatgttgcagatgaagtgatgttggtttgtacatgaat 654288  T
Q  418 tgggagagcttgttgattgcaaatgagagatcag 451  Q
    || || ||||||||||| |||| ||| |||||||    
T  654289 tgagaaagcttgttgatggcaattgaaagatcag 654322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 139 - 259
Target Start/End: Original strand, 3690402 - 3690522
Alignment:
Q  139 gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataa 238  Q
    |||||||| ||  |||| ||||| ||||| || ||||||||||| || ||||||||||| | ||| ||||| || ||||||||||| |||||||| ||||    
T  3690402 gcagtggcaactgcacgatattctgcctcagtggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataa 3690501  T
Q  239 gatatgctgatgttgaggtgc 259  Q
     |||||||||||| |||||||    
T  3690502 tatatgctgatgtggaggtgc 3690522  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 3690291 - 3690331
Alignment:
Q  28 tttgagcagagatatgtagcacctacattgtcacataataa 68  Q
    |||||||| |||||||| ||||||||||||||||| |||||    
T  3690291 tttgagcaaagatatgttgcacctacattgtcacacaataa 3690331  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 266
Target Start/End: Complemental strand, 32074185 - 32074058
Alignment:
Q  139 gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataa 238  Q
    |||||||| ||  |||| ||||| |||||  | ||||||||||| || ||||||||||| | ||| ||||| || ||||||||||| |||||||| ||||    
T  32074185 gcagtggcaactgcacgatattctgcctcaatggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataa 32074086  T
Q  239 gatatgctgatgttgaggtgcggtcatc 266  Q
     |||||||||||| |||||||| |||||    
T  32074085 tatatgctgatgtggaggtgcgatcatc 32074058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 157 - 293
Target Start/End: Complemental strand, 3019741 - 3019605
Alignment:
Q  157 tattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgagg 256  Q
    ||||||||||| || ||||| |  || || || |||||||| | ||| ||||||||||||||||||||||||||| | || |||||||| ||||| || |    
T  3019741 tattcagcctcagtggatgacctagcaacggtgcgttgtttccttgagagccaagaaataggattacctccaaaatatattagatatgcagatgtggaag 3019642  T
Q  257 tgcggtcatccatatttcctccccagtctgcatctgt 293  Q
    | |||||||| ||||| ||  |||| || ||||||||    
T  3019641 tacggtcatcaatattgccatcccaatcagcatctgt 3019605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 467
Target Start/End: Complemental strand, 3019532 - 3019431
Alignment:
Q  366 aagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcaggttg 465  Q
    ||||||||| || | |||||||| ||| ||   |||||| |||||||||||||| ||||| |||||||| ||||| || || ||||||| ||| || |||    
T  3019532 aagtagccgtttgagatgttgaaaatggagacttgtaggcttatgcatgaattgagagagtttgttgatggcaaaggaaaggtcaggccttgtgagattg 3019433  T
Q  466 ag 467  Q
    ||    
T  3019432 ag 3019431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 32074296 - 32074256
Alignment:
Q  28 tttgagcagagatatgtagcacctacattgtcacataataa 68  Q
    |||||||| |||||||| ||||||||||||||||| |||||    
T  32074296 tttgagcaaagatatgttgcacctacattgtcacacaataa 32074256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 28083395 - 28083522
Alignment:
Q  139 gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataa 238  Q
    |||||||| ||  |||| ||||| |||||  | ||||||||||| || ||||||||||| | ||| ||||| || ||||||||||| |||||||| ||||    
T  28083395 gcagtggcaactgcacgatattctgcctcattggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataa 28083494  T
Q  239 gatatgctgatgttgaggtgcggtcatc 266  Q
     |||||||||||| |||||||| |||||    
T  28083495 tatatgctgatgtggaggtgcgatcatc 28083522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 1109102 - 1109163
Alignment:
Q  205 agccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatc 266  Q
    |||||||| ||||||||||| |||||||| |||||||| ||||| || || ||||| |||||    
T  1109102 agccaagagataggattaccaccaaaaaatataagatacgctgaagtggatgtgcgatcatc 1109163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 28083284 - 28083324
Alignment:
Q  28 tttgagcagagatatgtagcacctacattgtcacataataa 68  Q
    |||||||| |||||||| ||||||||||||||||| |||||    
T  28083284 tttgagcaaagatatgttgcacctacattgtcacacaataa 28083324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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