View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7470_low_1 (Length: 954)
Name: NF7470_low_1
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7470_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 846; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 846; E-Value: 0
Query Start/End: Original strand, 24 - 943
Target Start/End: Original strand, 30877444 - 30878373
Alignment:
| Q |
24 |
agtacttaccttataagtgcttaatttaggttttatccaaacatggagttaaattacttttctcaatgattaaagaaaggaagatgtaaaagcattatgt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
30877444 |
agtacttaccttataagtgcttaatttaggttttatccaaacatggagttaaattacttttctgaatgattaaagaaaggatgatgtaaaagcattatgt |
30877543 |
T |
|
| Q |
124 |
tgaactaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
30877544 |
tgaactaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttctgcctcactatgattcttc |
30877643 |
T |
|
| Q |
224 |
aaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagaga |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30877644 |
aaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggttcctctacaagctcccctctctccctatccaaaaccagagaga |
30877743 |
T |
|
| Q |
324 |
aacttgaaccatacccacttccaattacctcattgtttacttcaaaaccatttttactaattctctcagtagcatctccaaatatatcataaccttccat |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30877744 |
aacttgaaccatacccacttccaattacctcattgtttacttcaaaaccatttttaccaattctctcagtagcatctccaaatatatcataaccttccat |
30877843 |
T |
|
| Q |
424 |
ttccatagcaaagtgaaaagagaaatgaaaaaggagagttgtttgtggggaccaaacacaggagacaaccttggaaacaatggaataaggagaggtgttt |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30877844 |
ttccatagcaaagtgaaaagagaaatgaaaaaggagagttgtttgtggggaccaaacacaggagacaaccttggaaacaatggaataaggagaggtgttt |
30877943 |
T |
|
| Q |
524 |
gttctgtgtcagagttgttttggagtgtgatagtgatgaaaatgacagtgtcagtgaacaagtgacagta---gatgatgatgatggctaaggaagtgaa |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30877944 |
gttctgtgtcagagttgttttggagtgtgatagtgatgaaaatgacagtgtcagtgaacaagtgacagtagatgatgatgatgatggctaaggaagtgaa |
30878043 |
T |
|
| Q |
621 |
ggaactgttatggaatacacacctttttatattggagaagttcttgtaccaataagatgtaaggtgtggccttggtactttctttacatgtaaaatgttg |
720 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
30878044 |
ggaactgttatggaatacacacctttttatattggagaagttcttgtaccaataagatgtaaggtgtggccttggtactttctttacttgtaaaatgttg |
30878143 |
T |
|
| Q |
721 |
aaaaatttgcttgatttcaatagtttatgcatactacaatcatatagaatcaaatattaataataatttttaagtttagttcaataaaatcgtcacacaa |
820 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
30878144 |
aaaaatttgcttgatttcaatagtttatgcatactagaatcatatagaatcaaatattaataataatttttaattttagttcaataaaatcgtcacacaa |
30878243 |
T |
|
| Q |
821 |
tccactataaatccatgtgagaggatcatatccatactaaaatcatttaaattatccttaaacttctcta-------tattatattttactagtatatga |
913 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
30878244 |
tccactataaatccaggtgagaggatcatatccatactaaaatcatttaaattatccttaaacttctctattaaacgtattatattttactagtatatga |
30878343 |
T |
|
| Q |
914 |
aaaaatataagtgagtcgagtcacaggttc |
943 |
Q |
| |
|
||||||||||||||||||||| || ||||| |
|
|
| T |
30878344 |
aaaaatataagtgagtcgagttacgggttc |
30878373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 5e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 123 - 351
Target Start/End: Original strand, 39332708 - 39332933
Alignment:
| Q |
123 |
ttgaactaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattctt |
222 |
Q |
| |
|
||||||||||||| ||| |||||||| |||| |||||| ||||||||||||| |||||| || ||||||||||| ||||| || |||||||||||||| |
|
|
| T |
39332708 |
ttgaactaaccttattagcccctggaataacactacgaagtgtatcaagatgtgaattaattcttgctcttctccttctttctgcttcactatgattctt |
39332807 |
T |
|
| Q |
223 |
caaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagag |
322 |
Q |
| |
|
||||||||||| ||||||||| || || |||||||||| ||||| ||| |||| |||||| |||||||| ||| | || ||||| |||||||| || |
|
|
| T |
39332808 |
caaagcttcaatacttctctc---aggtgatacaccctttctttccaatttcacagctgcctccacaagctctcctttttctctatctaaaaccagtgaa |
39332904 |
T |
|
| Q |
323 |
aaacttgaaccatacccacttccaattac |
351 |
Q |
| |
|
|| ||||||||| ||| ||||| |||| |
|
|
| T |
39332905 |
gaagatgaaccatatccatttccatttac |
39332933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 351
Target Start/End: Original strand, 30203571 - 30203705
Alignment:
| Q |
214 |
atgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaa |
313 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||||||||||||| ||| | ||| |||| |||||| |||| ||| ||| | || ||||||||| |
|
|
| T |
30203571 |
atgattcttcaaagcttcaatacttctctc---aggtgacacaccctttctttctaatttcacagttgcctccacaaactctcctttttctctatccaaa |
30203667 |
T |
|
| Q |
314 |
accagagagaaacttgaaccatacccacttccaattac |
351 |
Q |
| |
|
||||| || || ||||||||| ||| ||||| |||| |
|
|
| T |
30203668 |
accagcgaagaagatgaaccatatccatttccatttac |
30203705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 151 - 351
Target Start/End: Original strand, 12102483 - 12102677
Alignment:
| Q |
151 |
gacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttcaaagcttcaacacttctctctgtagtg |
250 |
Q |
| |
|
||||| |||||| |||||||||||| |||||| || |||||||||||| || || ||||||||||||||||||||||| | ||||||| | || |
|
|
| T |
12102483 |
gacactacgaagtgtatcaagatgtaaattaattcttgctcttctcctc---tctgcttcactatgattcttcaaagcttcgatacttctccc---aggt |
12102576 |
T |
|
| Q |
251 |
gacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagagaaacttgaaccatacccacttccaatta |
350 |
Q |
| |
|
||||||||||||| ||| | ||| |||| |||||| |||||||| ||| | || |||||||||||||| || || ||||||||| ||||||||| ||| |
|
|
| T |
12102577 |
gacacaccctttctttctaatttcacagctgcctccacaagctctcctttttctctatccaaaaccagtgaagaagatgaaccatatccacttccattta |
12102676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 343
Target Start/End: Original strand, 17146474 - 17146603
Alignment:
| Q |
209 |
tcactatgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctat |
308 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | ||| |||||||||| ||| | ||| |||| |||||| ||||||| ||| | || |||| |
|
|
| T |
17146474 |
tcactatgattcttcaaagcttcaatacttctctcag--gtg---acaccctttctttctaatttcacagctgcctccgcaagctctcctttttctctat |
17146568 |
T |
|
| Q |
309 |
ccaaaaccagagagaaacttgaaccatacccactt |
343 |
Q |
| |
|
|||||||||| || || ||||||||| |||||| |
|
|
| T |
17146569 |
ccaaaaccagtgaagaagatgaaccatatccactt |
17146603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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