View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7470_low_11 (Length: 519)
Name: NF7470_low_11
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7470_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Complemental strand, 6407468 - 6406983
Alignment:
| Q |
19 |
agaactgggtttgagcagagatatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6407468 |
agaactgggtttgagcagagatatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaa |
6407369 |
T |
|
| Q |
119 |
gccacatgagttcaacagatgcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaatagg |
218 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6407368 |
gccacatgagttcagcagatgtagtggctacagcacggtattcagcctcagttgatgatcgtgctacagtacgttgtttttgtgatagccaagaaatagg |
6407269 |
T |
|
| Q |
219 |
attacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcatctgtaaaggcaagaagattgaatgaggat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6407268 |
attacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcatctgtaaaggcaagaagattgaatgaggat |
6407169 |
T |
|
| Q |
319 |
ggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcatgaatt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6407168 |
ggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcaagaatt |
6407069 |
T |
|
| Q |
419 |
gggagagcttgttgattgcaaatgagagatcaggccgtgtcaggttgagatactgaagggagccaagaatttttctgtagtgtgtg |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6407068 |
gggagagcttgttgattgcaaatgagagatcaggtcgtgtcaggttgagatactgaagggagccaagaatttttctgtagtgtgtg |
6406983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 189 - 504
Target Start/End: Original strand, 40112935 - 40113250
Alignment:
| Q |
189 |
acgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgca |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40112935 |
acgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgca |
40113034 |
T |
|
| Q |
289 |
tctgtaaaggcaagaagattgaatgaggatggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgctttaaatgttgaa |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40113035 |
tctgtaaaggcaagaagattgaatgaggatggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgctttaaatgttgaa |
40113134 |
T |
|
| Q |
389 |
gatgaagggatgtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcaggttgagatactgaagggagccaagaat |
488 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40113135 |
gatgaagggatataggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcagattgagatactgaagggagccaagaat |
40113234 |
T |
|
| Q |
489 |
ttttctgtagtgtgtg |
504 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
40113235 |
ttttctgtagtgtgtg |
40113250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 40094462 - 40094636
Alignment:
| Q |
19 |
agaactgggtttgagcagagatatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaa |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40094462 |
agaactgggtttgagcagagacatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaa |
40094561 |
T |
|
| Q |
119 |
gccacatgagttcaacagatgcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgtt |
193 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40094562 |
gccacgtgagttcagcagatgcagtggctacagcacggtattcagcctcggttgatgatcgtgctacagtacgtt |
40094636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 293
Target Start/End: Complemental strand, 2662641 - 2662538
Alignment:
| Q |
190 |
cgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcat |
289 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||||||||||| | | || |||||||| ||||| || || |||||||| ||||| || ||||| || |||| |
|
|
| T |
2662641 |
cgttgtttccttgagagccaagaaataggattacctccaagatatattagatatgcagatgtggaagtacggtcatcgatattgccaccccaatcagcat |
2662542 |
T |
|
| Q |
290 |
ctgt |
293 |
Q |
| |
|
|||| |
|
|
| T |
2662541 |
ctgt |
2662538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 464
Target Start/End: Original strand, 9004961 - 9005025
Alignment:
| Q |
400 |
gtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcaggtt |
464 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||| |||||||||| ||| |||||||| ||||| |
|
|
| T |
9004961 |
gtaggtttgtgcatgaattgagagagtttgttgacagcaaatgagacatcgggccgtgtgaggtt |
9005025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 9004766 - 9004827
Alignment:
| Q |
205 |
agccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatc |
266 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||| ||||| || || ||||| ||||| |
|
|
| T |
9004766 |
agccaagagataggattaccaccaaaaaatataagatacgctgaagtggatgtgcgatcatc |
9004827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 454
Target Start/End: Complemental strand, 2662465 - 2662377
Alignment:
| Q |
366 |
aagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggcc |
454 |
Q |
| |
|
||||||||| || | |||||||| ||| || |||||| |||||||||||||| ||||| |||||||| ||||| || || ||||||| |
|
|
| T |
2662465 |
aagtagccgtttgagatgttgaaaatggagacttgtaggcttatgcatgaattgagagagtttgttgatggcaaaggaaaggtcaggcc |
2662377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 118 - 451
Target Start/End: Original strand, 653990 - 654322
Alignment:
| Q |
118 |
agccacatgagttcaacagatgcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaatag |
217 |
Q |
| |
|
||||||| |||||| ||| ||||||||| || |||||||||||||||| ||||| || ||||||||||| |||||||| ||||||| |||||| | | |
|
|
| T |
653990 |
agccacactagttcagcagttgcagtggccactgcacggtattcagcctcagttgaaga-cgtgctacagtgcgttgtttgcgtgataaccaagaggtgg |
654088 |
T |
|
| Q |
218 |
gattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcatctgtaaaggcaagaagattgaatgagga |
317 |
Q |
| |
|
| |||| | ||| ||| || |||||||| |||| || ||||| || |||||||| || |||||||||||||| || || ||| ||||| ||| || || |
|
|
| T |
654089 |
ggttactttcaagaaaaatgagatatgcaaatgtggatgtgcgatcttccatattgccaccccagtctgcatccgtgaaagcataaagatggaaggatga |
654188 |
T |
|
| Q |
318 |
tggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcatgaat |
417 |
Q |
| |
|
||||| ||| | | |||||||| |||||||| |||| | || |||||||| | ||||| |||||| |||||||| ||||| ||||| | ||||||| |
|
|
| T |
654189 |
tggttgcttcagaaaaatgccaaaattaatggtagcctttagataacgaagtagtctctttagatgttgcagatgaagtgatgttggtttgtacatgaat |
654288 |
T |
|
| Q |
418 |
tgggagagcttgttgattgcaaatgagagatcag |
451 |
Q |
| |
|
|| || ||||||||||| |||| ||| ||||||| |
|
|
| T |
654289 |
tgagaaagcttgttgatggcaattgaaagatcag |
654322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 139 - 259
Target Start/End: Original strand, 3690402 - 3690522
Alignment:
| Q |
139 |
gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataa |
238 |
Q |
| |
|
|||||||| || |||| ||||| ||||| || ||||||||||| || ||||||||||| | ||| ||||| || ||||||||||| |||||||| |||| |
|
|
| T |
3690402 |
gcagtggcaactgcacgatattctgcctcagtggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataa |
3690501 |
T |
|
| Q |
239 |
gatatgctgatgttgaggtgc |
259 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
3690502 |
tatatgctgatgtggaggtgc |
3690522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 3690291 - 3690331
Alignment:
| Q |
28 |
tttgagcagagatatgtagcacctacattgtcacataataa |
68 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
3690291 |
tttgagcaaagatatgttgcacctacattgtcacacaataa |
3690331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 266
Target Start/End: Complemental strand, 32074185 - 32074058
Alignment:
| Q |
139 |
gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataa |
238 |
Q |
| |
|
|||||||| || |||| ||||| ||||| | ||||||||||| || ||||||||||| | ||| ||||| || ||||||||||| |||||||| |||| |
|
|
| T |
32074185 |
gcagtggcaactgcacgatattctgcctcaatggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataa |
32074086 |
T |
|
| Q |
239 |
gatatgctgatgttgaggtgcggtcatc |
266 |
Q |
| |
|
|||||||||||| |||||||| ||||| |
|
|
| T |
32074085 |
tatatgctgatgtggaggtgcgatcatc |
32074058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 157 - 293
Target Start/End: Complemental strand, 3019741 - 3019605
Alignment:
| Q |
157 |
tattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgagg |
256 |
Q |
| |
|
||||||||||| || ||||| | || || || |||||||| | ||| ||||||||||||||||||||||||||| | || |||||||| ||||| || | |
|
|
| T |
3019741 |
tattcagcctcagtggatgacctagcaacggtgcgttgtttccttgagagccaagaaataggattacctccaaaatatattagatatgcagatgtggaag |
3019642 |
T |
|
| Q |
257 |
tgcggtcatccatatttcctccccagtctgcatctgt |
293 |
Q |
| |
|
| |||||||| ||||| || |||| || |||||||| |
|
|
| T |
3019641 |
tacggtcatcaatattgccatcccaatcagcatctgt |
3019605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 467
Target Start/End: Complemental strand, 3019532 - 3019431
Alignment:
| Q |
366 |
aagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcaggttg |
465 |
Q |
| |
|
||||||||| || | |||||||| ||| || |||||| |||||||||||||| ||||| |||||||| ||||| || || ||||||| ||| || ||| |
|
|
| T |
3019532 |
aagtagccgtttgagatgttgaaaatggagacttgtaggcttatgcatgaattgagagagtttgttgatggcaaaggaaaggtcaggccttgtgagattg |
3019433 |
T |
|
| Q |
466 |
ag |
467 |
Q |
| |
|
|| |
|
|
| T |
3019432 |
ag |
3019431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 32074296 - 32074256
Alignment:
| Q |
28 |
tttgagcagagatatgtagcacctacattgtcacataataa |
68 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
32074296 |
tttgagcaaagatatgttgcacctacattgtcacacaataa |
32074256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 28083395 - 28083522
Alignment:
| Q |
139 |
gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataa |
238 |
Q |
| |
|
|||||||| || |||| ||||| ||||| | ||||||||||| || ||||||||||| | ||| ||||| || ||||||||||| |||||||| |||| |
|
|
| T |
28083395 |
gcagtggcaactgcacgatattctgcctcattggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataa |
28083494 |
T |
|
| Q |
239 |
gatatgctgatgttgaggtgcggtcatc |
266 |
Q |
| |
|
|||||||||||| |||||||| ||||| |
|
|
| T |
28083495 |
tatatgctgatgtggaggtgcgatcatc |
28083522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 1109102 - 1109163
Alignment:
| Q |
205 |
agccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatc |
266 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||| ||||| || || ||||| ||||| |
|
|
| T |
1109102 |
agccaagagataggattaccaccaaaaaatataagatacgctgaagtggatgtgcgatcatc |
1109163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 28083284 - 28083324
Alignment:
| Q |
28 |
tttgagcagagatatgtagcacctacattgtcacataataa |
68 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
28083284 |
tttgagcaaagatatgttgcacctacattgtcacacaataa |
28083324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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