View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7470_low_12 (Length: 501)
Name: NF7470_low_12
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7470_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 57 - 493
Target Start/End: Original strand, 34955979 - 34956415
Alignment:
| Q |
57 |
tcttggtttatactcataactgaaaattaggttgcaacaaaagaagttttcaacattacactagaacttgaaggtaaattttatacgtatgcgcgtttac |
156 |
Q |
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| T |
34955979 |
tcttggttcatactcacacctgaaaactaggaagcaacaaaagaagttttccacattacactagaattagaaggtaaattttatccgtatgcgagtttac |
34956078 |
T |
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| Q |
157 |
cttcttgacacgtacatatccttcaattctacatcccccggatgacggtgctggtctttttgaatcctctgtaacatttaatttatcctccaaagctagc |
256 |
Q |
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| T |
34956079 |
cttcttgacacgtacatatccttcaattctacatcccccggatgacggtgctggtctttttgaatcctctgtaacatttaatttatcctccaaagctagc |
34956178 |
T |
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| Q |
257 |
ttatgatactctgaagggaaagacgccaatatattctccattgtctgcagcagagacacttcatatcaggcatgttgtactctaatggtaaacagtgatg |
356 |
Q |
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| T |
34956179 |
ttataatactctgaagggaaagacgccaatatattctccattgtctgcagcagagacacttcatatcaggcatgttgtactctaatggtaaacagtgatg |
34956278 |
T |
|
| Q |
357 |
ttcaattatacttaaaagcataaacacttcaaagtaaaatgatacaaatcatgctaatttaaattaaatataatgtgtaccttaacaaggctatctgtat |
456 |
Q |
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| T |
34956279 |
ttcaattatacttaaaagcataaacacttcaaagtaaaatgatacaaatcatgctaatttaaattaaatataatgtgtaccttaacaaggctatctgtat |
34956378 |
T |
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| Q |
457 |
cacgatctccataataagactcatgctcatgatgtcc |
493 |
Q |
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| T |
34956379 |
cacgatctccataataagactcatgctcatgatgtcc |
34956415 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 495
Target Start/End: Complemental strand, 31391094 - 31391018
Alignment:
| Q |
417 |
aaattaaatataatgtgtaccttaacaaggctatctgtatcacgatctccataataagactcatgctcatgatgtccat |
495 |
Q |
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| T |
31391094 |
aaattaaatat--tgtgaaccttgactaggctttctgtatcacggtctccataataggactcatgttcatgatgtccat |
31391018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 31391324 - 31391257
Alignment:
| Q |
151 |
gtttaccttcttgacacgtacatatccttcaattctacatcccccggatgacggtgctggtctttttg |
218 |
Q |
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| T |
31391324 |
gtttacctttttcacacgcacatatccctcaactctacatccaccggttgacggtgctggtctttttg |
31391257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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