View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7470_low_13 (Length: 457)
Name: NF7470_low_13
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7470_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 50644405 - 50644758
Alignment:
| Q |
11 |
acatcaacaagaagaaaaaaggca---ctgacattttaaatactagtgatgaaataatgaattatttaggaggtgggtgaatagccgttttcaaatatat |
107 |
Q |
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| T |
50644405 |
acatcaacaagaagaaaaaaggcaacactgacattttaaatactagtgatgaaataatgaattatttaggaggtgggtgaatagccgttttcaaatatat |
50644504 |
T |
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| Q |
108 |
atcatcgaatcaagctatcctctactaaccattaatccatcgatgattgcatgcatacttcacctcaatgacatgatataagcatattaattgtacactt |
207 |
Q |
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| T |
50644505 |
atcatcgaatcaagctatcctctactagccattaatccatcgatgattgcatgcatacttcacctcaatgacatgatataagcat----attgtacactt |
50644600 |
T |
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| Q |
208 |
taacctcgcttctcttactttgcagatagtatgtatatttgttgagccaatgaaaatgcagtgcctagcggaaaacacgacgaaatggcggagaacacaa |
307 |
Q |
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| T |
50644601 |
taacctcgcttctcttactttgcagatagtatgtatatttgttgagccaatgaaaattcagtgcctagcggaaaacacgacggaatggcggagaacacaa |
50644700 |
T |
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| Q |
308 |
aagccaaagccattaaaatttgccaactgtctcgtgaactcattcgctatccattcct |
365 |
Q |
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| T |
50644701 |
aagccaaagccattaaaatttgccaactgtctcgtgaactcattcgctatgcattcct |
50644758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 361 - 444
Target Start/End: Original strand, 50644788 - 50644871
Alignment:
| Q |
361 |
ttcctgaaaatgctctttataacgaaagcatgcttttacgaaccttcacgacacccttaatagtttaactctttgtatatgatg |
444 |
Q |
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| T |
50644788 |
ttcctaaaaatgctttttataacgaaagcatgctttcacgaaccttcacgacacccttaaaagtttaactccttgtatatgatg |
50644871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 34467494 - 34467597
Alignment:
| Q |
252 |
agccaatgaaaatgcagtgcctagcggaaaacacgacgaaatggcggagaacacaaaagccaaagccattaaaatttgccaactgtctcgtgaactcatt |
351 |
Q |
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| T |
34467494 |
agccaatgaaaatgtagtgcctaacggaaaacatgtcaggatggcggaaaacacggaatccaaaaccactaaaacatgccaagtgtctcatgaactcctt |
34467593 |
T |
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| Q |
352 |
cgct |
355 |
Q |
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|||| |
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| T |
34467594 |
cgct |
34467597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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