View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7470_low_14 (Length: 453)
Name: NF7470_low_14
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7470_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 27932783 - 27932953
Alignment:
| Q |
9 |
tggtggtacaaaagcattattttttaaacttggaaacttacctgtaaaaaccaaccatgggattaaattcaaattaaaacactattctattataaataat |
108 |
Q |
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| T |
27932783 |
tggtggtacaaatgcattattttttaaacttggaaacttacctgtaaaaaccaaccatgggattaaattcaaattaaaacactattctattataaaaaat |
27932882 |
T |
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| Q |
109 |
ttaaagtaggaaacttacctgtaaaaattctaaaatagagatatacatttattattacagaaagaattggg |
179 |
Q |
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| T |
27932883 |
ttaaagtaggaaacttacctgtaaaaattctaaaatagagatatacatttattattacagaaagaattggg |
27932953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 250 - 364
Target Start/End: Original strand, 27933145 - 27933259
Alignment:
| Q |
250 |
atcaaaattcattctttgtatgtcttttaagataattatgattaaatttaaatattttaagtgatttgaacccttaaacaaatatgatttgatggttatg |
349 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
27933145 |
atcacaattcattctttgtatgtattttaagataattatgattaaatttaaatattttaagtgatttgaatccttaaacaaatatgatttgatgattatg |
27933244 |
T |
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| Q |
350 |
attgactcggtgtaa |
364 |
Q |
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| T |
27933245 |
attgactccgtgtaa |
27933259 |
T |
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