View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7470_low_20 (Length: 322)
Name: NF7470_low_20
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7470_low_20 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr3 (3 HSPs) |
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|
Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 322
Target Start/End: Original strand, 827244 - 827552
Alignment:
| Q |
14 |
gacatcaaagactaggccatatgtcagaacgtggcttaaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtga |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827244 |
gacatcaaagactaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtga |
827343 |
T |
|
| Q |
114 |
gcactgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827344 |
gcactgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtca |
827443 |
T |
|
| Q |
214 |
ccagaaatatctcagggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacctaatcacgaagaagtcggatgtgt |
313 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
827444 |
ccagaattatctctgggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacccaatcaagaagaagtcggatgtgt |
827543 |
T |
|
| Q |
314 |
ttccagtat |
322 |
Q |
| |
|
||||||||| |
|
|
| T |
827544 |
ttccagtat |
827552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 9442642 - 9442336
Alignment:
| Q |
16 |
catcaaagactaggccatatgtcagaacgtggcttaaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagc |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442642 |
catcaaagactaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagc |
9442543 |
T |
|
| Q |
116 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442542 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
9442443 |
T |
|
| Q |
216 |
agaaatatctcagggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacctaatcacgaagaagtcggatgtgttt |
315 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
9442442 |
agaattatctctgggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgttt |
9442343 |
T |
|
| Q |
316 |
ccagtat |
322 |
Q |
| |
|
||||||| |
|
|
| T |
9442342 |
ccagtat |
9442336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 24597030 - 24596732
Alignment:
| Q |
24 |
actaggccatatgtcagaacgtggcttaaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtg |
123 |
Q |
| |
|
|||||||||||| || |||||||| || |||| |||| ||||| ||||| || | |||||||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
24597030 |
actaggccatatatcggaacgtggtttgaaagctcttgaggaacaaaatcttctacctgggctcaagacagtgaatttgtctttctgtgagcactgtgtg |
24596931 |
T |
|
| Q |
124 |
ataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatat |
223 |
Q |
| |
|
| ||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24596930 |
acaagcaagcaacatagattgaagttttccagagtaactactagaagcaaatacatacttgacttgatacattctgatgtgtgggagtcaccacaaatat |
24596831 |
T |
|
| Q |
224 |
ctcagggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacctaatcacgaagaagtcggatgtgtttccagtat |
322 |
Q |
| |
|
| ||||||||||| | | || |||||||| |||||||| | || || |||||||||||||||| ||||| ||||||||| |||||||| |||||| |
|
|
| T |
24596830 |
ccatgggaggagcaaaacattttgtgtcatttattgatgatcactctaggagattatgggtgtacccaatcaagaagaagtcaaatgtgtttacagtat |
24596732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 27877259 - 27876953
Alignment:
| Q |
16 |
catcaaagactaggccatatgtcagaacgtggcttaaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagc |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27877259 |
catcaaagactaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagc |
27877160 |
T |
|
| Q |
116 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27877159 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
27877060 |
T |
|
| Q |
216 |
agaaatatctcagggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacctaatcacgaagaagtcggatgtgttt |
315 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
27877059 |
agaattatctctgggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgttt |
27876960 |
T |
|
| Q |
316 |
ccagtat |
322 |
Q |
| |
|
||||||| |
|
|
| T |
27876959 |
ccagtat |
27876953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 34353777 - 34354083
Alignment:
| Q |
16 |
catcaaagactaggccatatgtcagaacgtggcttaaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
34353777 |
catcaaagactaggccatatgtcagaacgtggcttgaaagtccttgctgaacgcaatctccttcacgggctcaaggcagtaaatttaccattttgtgagc |
34353876 |
T |
|
| Q |
116 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34353877 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactaaaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
34353976 |
T |
|
| Q |
216 |
agaaatatctcagggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacctaatcacgaagaagtcggatgtgttt |
315 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
34353977 |
agaaatatctctgggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacccaatcaagaagaagtcggatgtgttt |
34354076 |
T |
|
| Q |
316 |
ccagtat |
322 |
Q |
| |
|
||||||| |
|
|
| T |
34354077 |
ccagtat |
34354083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 41720177 - 41720483
Alignment:
| Q |
16 |
catcaaagactaggccatatgtcagaacgtggcttaaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
41720177 |
catcaaagactaggccatatgtcagaacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaaggcagtaaatttaccattttgtgagc |
41720276 |
T |
|
| Q |
116 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41720277 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
41720376 |
T |
|
| Q |
216 |
agaaatatctcagggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacctaatcacgaagaagtcggatgtgttt |
315 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
41720377 |
agaaatatctctaggaggagcaagatattttgtgtcattcattgatgactattccagaagattatgggtgtacccaatcaagaagaagtcggatgtgttt |
41720476 |
T |
|
| Q |
316 |
ccagtat |
322 |
Q |
| |
|
||||||| |
|
|
| T |
41720477 |
ccagtat |
41720483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 30948733 - 30948427
Alignment:
| Q |
16 |
catcaaagactaggccatatgtcagaacgtggcttaaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30948733 |
catcaaagactaggccatatgtcagaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagc |
30948634 |
T |
|
| Q |
116 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30948633 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
30948534 |
T |
|
| Q |
216 |
agaaatatctcagggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacctaatcacgaagaagtcggatgtgttt |
315 |
Q |
| |
|
| || |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
30948533 |
aaaattatctctgggaggagcaagatacttcgtgtcattcattgatgactattctagaagattatgggtgtacccaatcaagaagaagtcggatgtgttt |
30948434 |
T |
|
| Q |
316 |
ccagtat |
322 |
Q |
| |
|
||||||| |
|
|
| T |
30948433 |
ccagtat |
30948427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 42267670 - 42267976
Alignment:
| Q |
16 |
catcaaagactaggccatatgtcagaacgtggcttaaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagc |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42267670 |
catcaaagactaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagc |
42267769 |
T |
|
| Q |
116 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42267770 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
42267869 |
T |
|
| Q |
216 |
agaaatatctcagggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacctaatcacgaagaagtcggatgtgttt |
315 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
42267870 |
agaattatctctgggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgttt |
42267969 |
T |
|
| Q |
316 |
ccagtat |
322 |
Q |
| |
|
||||||| |
|
|
| T |
42267970 |
ccagtat |
42267976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 48700371 - 48700065
Alignment:
| Q |
16 |
catcaaagactaggccatatgtcagaacgtggcttaaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagc |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48700371 |
catcaaagactaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagc |
48700272 |
T |
|
| Q |
116 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48700271 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
48700172 |
T |
|
| Q |
216 |
agaaatatctcagggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacctaatcacgaagaagtcggatgtgttt |
315 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
48700171 |
agaattatctctgggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgttt |
48700072 |
T |
|
| Q |
316 |
ccagtat |
322 |
Q |
| |
|
||||||| |
|
|
| T |
48700071 |
ccagtat |
48700065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 24 - 322
Target Start/End: Original strand, 2000660 - 2000958
Alignment:
| Q |
24 |
actaggccatatgtcagaacgtggcttaaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtg |
123 |
Q |
| |
|
||||||||||||||| |||| ||| || |||| |||||||||| ||||| || | |||||||||||| | ||||| | |||||||||||||||||| |
|
|
| T |
2000660 |
actaggccatatgtcggaacatggtttgaaagctcttgcggaacaaaatcttctacctgggctcaagacaatgaatttgtctttctgtgagcactgtgtg |
2000759 |
T |
|
| Q |
124 |
ataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatat |
223 |
Q |
| |
|
| ||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||| |||||| |
|
|
| T |
2000760 |
acaagcaagcaacatagattgaagttttctatagtaactactagaagcaaatacatacttgacttaatacattctgatgtgtgggagtcgccacaaatat |
2000859 |
T |
|
| Q |
224 |
ctcagggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacctaatcacgaagaagtcggatgtgtttccagtat |
322 |
Q |
| |
|
| ||||||||||| ||| || |||||||| ||||||||| | || || |||||||||||||||| ||||| ||||||||| |||||||| |||||| |
|
|
| T |
2000860 |
ccatgggaggagcaaaatattttgtgtcatttattgatgaccactctaggagattatgggtgtacccaatcaagaagaagtcaaatgtgtttacagtat |
2000958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 5821825 - 5821519
Alignment:
| Q |
16 |
catcaaagactaggccatatgtcagaacgtggcttaaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagc |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821825 |
catcaaagactaggccatatgtctgaacgtggcttgaaagtccttgtggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagc |
5821726 |
T |
|
| Q |
116 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821725 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
5821626 |
T |
|
| Q |
216 |
agaaatatctcagggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacctaatcacgaagaagtcggatgtgttt |
315 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
5821625 |
agaattatctctgggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacccaatcaagaagaagtcagatgtgttt |
5821526 |
T |
|
| Q |
316 |
ccagtat |
322 |
Q |
| |
|
||||||| |
|
|
| T |
5821525 |
ccagtat |
5821519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 2815813 - 2815507
Alignment:
| Q |
16 |
catcaaagactaggccatatgtcagaacgtggcttaaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagc |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
2815813 |
catcaaagactaggccatatgtcataacgtggcttgaaagtccttgcggaacgcaatctccttcacgggctcaattcagtaaatttaccattttgtgagc |
2815714 |
T |
|
| Q |
116 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2815713 |
actgtgtgataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcacc |
2815614 |
T |
|
| Q |
216 |
agaaatatctcagggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacctaatcacgaagaagtcggatgtgttt |
315 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| | ||||||| |
|
|
| T |
2815613 |
agaattatctctgggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtaaccaatcaagaagaagtcagttgtgttt |
2815514 |
T |
|
| Q |
316 |
ccagtat |
322 |
Q |
| |
|
||||||| |
|
|
| T |
2815513 |
ccagtat |
2815507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 24 - 315
Target Start/End: Original strand, 42586726 - 42587017
Alignment:
| Q |
24 |
actaggccatatgtcagaacgtggcttaaaagtccttgcggaacgcaatctccttcacgggctcaagacagtaaatttaccattctgtgagcactgtgtg |
123 |
Q |
| |
|
||||||||||||||| |||||||| || |||| |||||||||| ||||| || | |||||||||||| | ||||| | |||||||||||||||||| |
|
|
| T |
42586726 |
actaggccatatgtcggaacgtggtttgaaagctcttgcggaacaaaatcttctacctgggctcaagacaatgaatttgtctttctgtgagcactgtgtg |
42586825 |
T |
|
| Q |
124 |
ataagcaagcaacatagattgaagtttgctagagtaactactagaagcaaacacatactagacttgatacattctgatgtgtgggagtcaccagaaatat |
223 |
Q |
| |
|
| ||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42586826 |
acaagcaagcaacatagattgaagttttccagagtaactactagaagcaaatacatacttgacttgatacattctgatgtgtgggagtcaccacaaatat |
42586925 |
T |
|
| Q |
224 |
ctcagggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacctaatcacgaagaagtcggatgtgttt |
315 |
Q |
| |
|
| ||||||||||| ||| || |||||||| |||||||| | || || |||||||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
42586926 |
ccatgggaggagcaaaatattttgtgtcatttattgatgatcactctaggagattatgggtgtacccaatcaagaagaagtcaaatgtgttt |
42587017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 59 - 211
Target Start/End: Complemental strand, 8136971 - 8136818
Alignment:
| Q |
59 |
ttgcggaacgcaatctcctt-cacgggctcaagacagtaaatttaccattctgtgagcactgtgtgataagcaagcaacatagattgaagtttgctagag |
157 |
Q |
| |
|
|||||||||||||||||||| ||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8136971 |
ttgcggaacgcaatctcctttcacaggctgaagacggtaaacttaccattctgtgagcactgtgtgataagcaagcaacatagattgaagtttgctagag |
8136872 |
T |
|
| Q |
158 |
taactactagaagcaaacacatactagacttgatacattctgatgtgtgggagt |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||| |||||||||||||| |
|
|
| T |
8136871 |
taactactagaagcaaacatatactagacttgatccattatgatgtgtgggagt |
8136818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 206 - 322
Target Start/End: Complemental strand, 8134907 - 8134791
Alignment:
| Q |
206 |
gggagtcaccagaaatatctcagggaggagcaagatacttcgtgtcattcattgatgactattccagaagattatgggtgtacctaatcacgaagaagtc |
305 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
8134907 |
gggagtcaccagaaatatctctgggaggggcaagatatttcgtctcattcattgattactattccagaagattatgggtgtacccaattaagaagaagtc |
8134808 |
T |
|
| Q |
306 |
ggatgtgtttccagtat |
322 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
8134807 |
agatgtgttttcagtat |
8134791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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