View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7470_low_21 (Length: 321)

Name: NF7470_low_21
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7470_low_21
NF7470_low_21
[»] chr8 (1 HSPs)
chr8 (19-310)||(33127238-33127529)


Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 33127529 - 33127238
Alignment:
Q  19 caattgaatcaaaacaaaaccatattaacatgtacgaagaatacttacttgtagcactttatccattagcaaaaggaaacatcttgatttgcaaaatgtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33127529 caattgaatcaaaacaaaaccatattaacatgtacgaagaatacttacttgtagcactttatccattagcaaaaggaaacatcttgatttgcaaaatgtc 33127430  T
Q  119 aaaccaaatgttactaatggtttagtacatatgcaataatactaccagtaaatacctcgaaaagaatcttttgaaaatcgatgttataatgaaactcggg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33127429 aaaccaaatgttactaatggtttagtacatatgcaataatactaccagtaaatacctcgaaaagaatcttttgaaaatcgatgttataatgaaactcggg 33127330  T
Q  219 tttagaaacaggaatgagaaatagagaaaatgtgtttttactatataaatatataaaatgtgtctttcctccctcaaatatattcctagaat 310  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33127329 tttagaaacaggaatgaaaaatagagaaaatgtgtcttcactatataaatatataaaatgtgtctttcctccctcaaatatattcctagaat 33127238  T

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