View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7470_low_22 (Length: 307)

Name: NF7470_low_22
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7470_low_22
NF7470_low_22
[»] chr3 (1 HSPs)
chr3 (1-297)||(26003610-26003909)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 26003610 - 26003909
Alignment:
Q  1 cgtcttcaatctgaactgtagatgcta-------taggatgataggatgccttcatttcattctttaacattcttcattacaattagtctgtagataggg 93  Q
    ||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26003610 cgtcttcaatctgaagtgtagatgctacataaattaggatgataggatgccttcatttcattctttaacattcttcattacaattagtcagtagataggg 26003709  T
Q  94 aatgtgataatagttaacagaaagaaagacggtgccctaaaatagagtacctagatattattctgtaaaaatagcagaaatttggtgaaattttgtaacc 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26003710 aatgtgataatagttaacagaaagaaagacggtgccctaaaatagagtacctagatattattctgtaaaaatagcagaaatttggtaaaattttgtaacc 26003809  T
Q  194 tgtagctgaggagagagggaataggatgtataaagtaannnnnnngtaaaatgatcttgatttaatgataaacannnnnnnagtacaaagatattgcaca 293  Q
    | ||||||||||||    ||||||||||||||||||||       ||| |||||||||||||||||||||||||       ||||||||||||||||| |    
T  26003810 tatagctgaggaga----gaataggatgtataaagtaacttttttgtataatgatcttgatttaatgataaacatttttttagtacaaagatattgcaga 26003905  T

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