View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7470_low_23 (Length: 306)
Name: NF7470_low_23
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7470_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 9424454 - 9424592
Alignment:
| Q |
1 |
cctctcaagctaactattgtttttgttctctcttcatgaccaaatataatgtaacaatggaatgtaaatcagaaaatatatatgatctattgtttcatgc |
100 |
Q |
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| T |
9424454 |
cctctcaagctaactattgtttttgttctctcttcatgaccaaatataatgtaacaatggaatgtaaatcagaaaatatatatgatctattgtttcatgc |
9424553 |
T |
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| Q |
101 |
atcctttgtgacaaaatataaaagagatctataagtcaa |
139 |
Q |
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| T |
9424554 |
atcctttgtgacaaaatataaaagagatctataagtcaa |
9424592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 196 - 299
Target Start/End: Original strand, 9424836 - 9424940
Alignment:
| Q |
196 |
gcttatagagttatatagtgtatatttagggtacataggctagagtttggtaattgaattatgt--ttccatcagacagaaattaattaactggttattc |
293 |
Q |
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| T |
9424836 |
gcttatagagt-atatagtgtatatttagggtacataggatagagtttggtaatagaattatattcttccatcaggcagaaattaattaactggttattc |
9424934 |
T |
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| Q |
294 |
taattg |
299 |
Q |
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|||||| |
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| T |
9424935 |
taattg |
9424940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 9424765 - 9424809
Alignment:
| Q |
131 |
ataagtcaaatgtttttctctaaattttagactaaatacatttca |
175 |
Q |
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| T |
9424765 |
ataagtcaaatgtttttctctaaattttagactaaatacatttca |
9424809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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