View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7470_low_24 (Length: 289)
Name: NF7470_low_24
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7470_low_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 26239090 - 26239372
Alignment:
| Q |
7 |
aaaaggctttaaatgtgatacttttgagaaaaaacctgaaaaataacccaatgttggatttttggattttgggtatgtgagagaggagttttacggcaca |
106 |
Q |
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| T |
26239090 |
aaaaggcttgaaatgtgatgcttttgagaaaaaacctaaaaaataacccaatgttggatttttggattttgggtatgtgagagaggagttttagggcaca |
26239189 |
T |
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| Q |
107 |
atagaaaccgttgaaatgaaggaaattttctatttcgagttatatatatagaaaaggttcggattatataacccgaaacacgcattaattacaaagaaga |
206 |
Q |
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| T |
26239190 |
atagaaaccgttgaaatgaaggaaattttctatttcgagttatatatatagaaaaggttcggattatataacccgaaacacacattaattacaaagaaga |
26239289 |
T |
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| Q |
207 |
cctaagcccaaagaagaaagctacacattaattacacgaggagtaaaaatctcaaacatatcagcttacaacaaatgacgcaa |
289 |
Q |
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| T |
26239290 |
cctaagcccaaagaagaaagctacacattaattacacaaggagtaaaaatctcaaacatatcagattacaagaaatgacgcaa |
26239372 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 11154226 - 11154316
Alignment:
| Q |
1 |
tgtttgaaaaggctttaaatgtgatacttttgaga---aaaaacctgaaaaataacccaatgttggatttttggattttgggtatgtgaga |
88 |
Q |
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|||||||||| |||| ||||||||| ||||||||| |||| ||| |||||| ||||||||||| | ||||| |||||||| ||||||| |
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| T |
11154226 |
tgtttgaaaatgcttgaaatgtgatgcttttgagaaacaaaatcctcaaaaatcacccaatgttgaaattttgaattttgggggtgtgaga |
11154316 |
T |
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