View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7470_low_25 (Length: 281)
Name: NF7470_low_25
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7470_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 37 - 269
Target Start/End: Original strand, 742170 - 742388
Alignment:
| Q |
37 |
gacagacatacacgtataatcacataaaaaatagggaggaaaaatgcttgtgcttttccatatttttcgtttgtccaacgactattgttgaaatgataaa |
136 |
Q |
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| T |
742170 |
gacagacatacacgtataatcacataaaaaatagggaggaaaaatgcttgtgcttttccatatttttcgtttgtccaacgactattgttgaaatgataaa |
742269 |
T |
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| Q |
137 |
cacaatttgttagccaaacagtaaatcttttctaagttgggctccttcattgcttctaattcattgaaatatgaattgatgggtatctattatatattgc |
236 |
Q |
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| T |
742270 |
cacaatttgttagccaaacagtaaatcttttctaagttgggctcc--------------ttcattgaaatatgaattgatgggtatctattatatattgc |
742355 |
T |
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| Q |
237 |
cacttcagtgtgcgaccaaaccatgatgtccat |
269 |
Q |
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| T |
742356 |
cacttcattgtgcgaccaaaccatgatgaccat |
742388 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 3983272 - 3983224
Alignment:
| Q |
119 |
tattgttgaaatgataaacacaatttgttagccaaacagtaaatctttt |
167 |
Q |
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| T |
3983272 |
tattgttgaaatgatacacaaaatttgttagccagtcaataaatctttt |
3983224 |
T |
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