View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7470_low_27 (Length: 269)
Name: NF7470_low_27
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7470_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 129 - 254
Target Start/End: Original strand, 2625175 - 2625298
Alignment:
| Q |
129 |
gtgggaatatcggccagagactcttacaaaccgactcgcccagttggatagagaggggaccaaatctcccttttccgggaacttctcgcattgcgcgaag |
228 |
Q |
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| T |
2625175 |
gtgggaatatcggacagagactcttacaaaccgactcacccagttggatagag--gggaccgaatctgccttttccgggaacttcttgcattgcgcgaag |
2625272 |
T |
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| Q |
229 |
aatatccacaaaactgaccccctgat |
254 |
Q |
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| T |
2625273 |
aatatccacaaaactgaccccctgat |
2625298 |
T |
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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 31772811 - 31772896
Alignment:
| Q |
2 |
taactttgattaacctcaaaagtcaggttatattatatctcggatggccgagctggacccagaccctttctgggttgaaaaccgaaccagc |
92 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||||||| |||||||||||||| |||| |
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| T |
31772811 |
taactttgattaacctcaaaagtcaggttatat-----ctcagatgggcgagctggaccccgaccctttctaggttgaaaaccgaatcagc |
31772896 |
T |
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