View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7470_low_38 (Length: 222)
Name: NF7470_low_38
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7470_low_38 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34955683 - 34955906
Alignment:
| Q |
1 |
ataagcttaggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctg |
100 |
Q |
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| T |
34955683 |
ataagcttaggtgacaatttctttccaaaagataaatggtgtacggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctg |
34955782 |
T |
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| Q |
101 |
agatgatcaagtttcctggaacctgcagagtgcaaaacagcttacgtttcggcataatatttaaaatac--agagaaaaataataggaagtcatatgccg |
198 |
Q |
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| T |
34955783 |
agatgatcaagtttcctggaacctgcagagtgcaaaacagcttatgtttcggcataatatttaaaatacagagagaaaaataataggaagtcatatgccg |
34955882 |
T |
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| Q |
199 |
tatattatatcatttatttctgct |
222 |
Q |
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|||||||||||||||||||||||| |
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| T |
34955883 |
tatattatatcatttatttctgct |
34955906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 31391785 - 31391666
Alignment:
| Q |
8 |
taggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctgagatgat |
107 |
Q |
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|||||| || ||| ||||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||| | |
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| T |
31391785 |
taggtgtcactttttttccaaaagatagatggttgatgacatgtgacatgttcatttgagaagcatcaaatgaatgtgcatctgatctagctgagacaac |
31391686 |
T |
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| Q |
108 |
caagtttcctggaacctgca |
127 |
Q |
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| T |
31391685 |
caagcttcctggaacctgca |
31391666 |
T |
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