View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7470_low_5 (Length: 717)

Name: NF7470_low_5
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7470_low_5
NF7470_low_5
[»] chr1 (6 HSPs)
chr1 (15-682)||(9804675-9805341)
chr1 (74-506)||(9817777-9818211)
chr1 (15-355)||(9806455-9806792)
chr1 (567-710)||(9817550-9817693)
chr1 (564-703)||(9817438-9817577)
chr1 (574-682)||(9817341-9817448)
[»] scaffold0432 (3 HSPs)
scaffold0432 (12-503)||(11788-12285)
scaffold0432 (560-710)||(11558-11708)
scaffold0432 (564-682)||(11467-11585)
[»] chr7 (1 HSPs)
chr7 (352-506)||(42778749-42778900)
[»] chr8 (1 HSPs)
chr8 (40-131)||(2371052-2371144)


Alignment Details
Target: chr1 (Bit Score: 559; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 15 - 682
Target Start/End: Complemental strand, 9805341 - 9804675
Alignment:
Q  15 gacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatttttgttttattcggttattaaaata 114  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9805341 gacatcattgaacaggacaagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattttttttttattcggttattaaaata 9805242  T
Q  115 tgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaa 214  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |  |||||||||||||||||||||||||||||||||    
T  9805241 tgtacttgtatttgttattttctatttacttctagtacacattttatattaaatttttgtacataggaatgcatcaaagggaaaaggaattcttgttgaa 9805142  T
Q  215 caaaatgaaaagcaccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagtataagaaatccatctgtggataataaattaa 314  Q
    |||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9805141 caaaatgaaaagcactggtgatgaggaggaagactcttccccaaaggtaagatggggaatttgaagagtataagaaatccatgtgtggataataaattaa 9805042  T
Q  315 aataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnn 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||       
T  9805041 aataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaatttgagaaagacatgcaaaatgatctagataaa 9804942  T
Q  415 nnnntatatgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataaccattcatgag 514  Q
         |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9804941 aaaa-atatgaaaaaagtttggattacctttcttgcccaaataatgaaacgaggttgaactttcatgaaaactccatcaaaagagataaccattcatgag 9804843  T
Q  515 aggttggcaacggcgactggtcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggtt 614  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9804842 aggttggcaacggcgactgatcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgcttggagagaggtt 9804743  T
Q  615 ggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgaggatgggagga 682  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9804742 ggcaacagcgattgagggagaaaattgtgtttagggtttcaagagaatgagaaatgaggatgggagga 9804675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 74 - 506
Target Start/End: Complemental strand, 9818211 - 9817777
Alignment:
Q  74 aaggtatattgtgattt--ttgttttattcggttattaaaatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttt 171  Q
    |||||||||||||||||  || |||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  9818211 aaggtatattgtgatttattttttttatacggttattaaattatgtacttgtatttgttattttctatttacttctagtacacaatttatattaaatttt 9818112  T
Q  172 tgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcaccagtgatgagcaggaagactcttccccaaaagtaagatgggg 271  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  9818111 tgtacacaagaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcactagtgatgaggaggaagactcttccccaaaggtaagatgggg 9818012  T
Q  272 aatttgaagagt--ataagaaatccatctgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaa 369  Q
    ||||||||||||  | ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  9818011 aatttgaagagtagaaaagaaatccatgtgtagataataaattaaaataaaatccatgtatttatcacatagtatgatgtttgaaatcactcacataaaa 9817912  T
Q  370 gacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggt 469  Q
    ||||||||||||| ||||||||||||||||||||||| ||||        || || ||||||||| ||||||||||||||||||||||||| ||||||||    
T  9817911 gacaaccacaaatcagagaaagacatgcaaaatgatctagataaaaaa--atgtggaaaaagttttgattaccttttttgcccaaataatggaacgaggt 9817814  T
Q  470 tgaagtttcatgaaaactccatcaaaagagataacca 506  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9817813 tgaagtttcatgaaaattccatcaaaagagataacca 9817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 15 - 355
Target Start/End: Original strand, 9806455 - 9806792
Alignment:
Q  15 gacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatt--tttgttttattcggttattaaaa 112  Q
    |||||||||||||| || |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||  ||| ||||| | ||||||| |||    
T  9806455 gacatcattgaacaagacaagatggaaggtatttcacgtgctcacgaaaagggagaatcaaggtatattgtgatttatttattttagttggttattcaaa 9806554  T
Q  113 tatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttg 212  Q
    ||||||||||| |||||||||| ||||||  ||||| |||||||||||| || |||||||||||||            ||||||||||||||| ||||||    
T  9806555 tatgtacttgtgtttgttattttctatttgtttctaatacacattttatatttaatttttgtacac------------aagggaaaaggaattattgttg 9806642  T
Q  213 aacaaaatgaaaag-----caccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagt---ataagaaatccatctgtggat 304  Q
    ||||||||||| ||     ||| |  || ||| ||||||||| || ||| |||||||| |||||||||||||||||   ||||||| | ||| | |        
T  9806643 aacaaaatgaagaggaggccactatagaagaggaggaagactatt-cccgaaagtaaggtggggaatttgaagagtagaataagaagttcatgtctaccc 9806741  T
Q  305 aataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaa 355  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9806742 aataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaa 9806792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 567 - 710
Target Start/End: Complemental strand, 9817693 - 9817550
Alignment:
Q  567 ttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgaga 666  Q
    ||||||||||||||||||||||||||  ||| || |||||||||||||| ||||||||  |||||| ||||||| ||||||||||||||||| |||||||    
T  9817693 ttttttctgatcgatgtcgatctcagcaatgttggtaggagagaggttgtcaacggcggatgagggggaaaattgtgtttagggtttcaagataatgaga 9817594  T
Q  667 aatgaggatgggaggattattttgtttgattgatgtccatctca 710  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  9817593 aatgaggatgggaggattcttttgtttgattgatgtcgatctca 9817550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 564 - 703
Target Start/End: Complemental strand, 9817577 - 9817438
Alignment:
Q  564 ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg 663  Q
    ||||||| | |||| |||||||||||||   |||||| ||||||||||||||||| | |||  |||||||||||| ||||||||||||||||| ||||||    
T  9817577 ttcttttgtttgattgatgtcgatctcacctatggtggtaggagagaggttggcagcagcggctgagggagaaaactttgtttagggtttcaaaagaatg 9817478  T
Q  664 agaaatgaggatgggaggattattttgtttgattgatgtc 703  Q
    |||||||||||| |||||||| ||||| ||||| ||||||    
T  9817477 agaaatgaggattggaggattcttttgattgatcgatgtc 9817438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 574 - 682
Target Start/End: Complemental strand, 9817448 - 9817341
Alignment:
Q  574 tgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgagg 673  Q
    ||||||||||||||| ||| ||||||| || |||||||||||||| |||||  |||||||||||| | ||||||||||||| ||||||||||||||||||    
T  9817448 tgatcgatgtcgatc-cagcgatggtggtatgagagaggttggcagcggcggctgagggagaaaactgtgtttagggtttctagagaatgagaaatgagg 9817350  T
Q  674 atgggagga 682  Q
    |||||||||    
T  9817349 atgggagga 9817341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 215; Significance: 1e-117; HSPs: 3)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 12 - 503
Target Start/End: Complemental strand, 12285 - 11788
Alignment:
Q  12 atggacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaa 110  Q
    |||||||||||||| || || ||||||||||||||| |||||||||  |||||||| ||||||| |||| ||||||||| || ||||| | ||||||| |    
T  12285 atggacatcattgatcatgacaagatggaaggtattccatgtactcatgaaaagggggaatcaacgtattttgtgatttatttttttagttggttattca 12186  T
Q  111 aatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgt 210  Q
    | ||||||||| | ||||||||||  |||||||||||||||| |||||||| ||||||||| ||||||   |||||| | |||||| |||||||||||||    
T  12185 attatgtacttatgtttgttattttatatttacttctagtac-cattttatattaaattttggtacacgataatgcagcgaagggagaaggaattcttgt 12087  T
Q  211 tgaacaaaatgaaaag-----caccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagta---taagaaatccatctgtgg 302  Q
    ||||||||||||||||     ||| |||||| |  ||||||||||||||| ||| ||||||||||||||||||||||||   ||||||||| || |||      
T  12086 tgaacaaaatgaaaaggatgccactagtgataacgaggaagactcttccctaaa-gtaagatggggaatttgaagagtagaataagaaatctatgtgtac 11988  T
Q  303 ataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaat 402  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||    
T  11987 ataataaaataaaataaaattcatgtatttattacatagtatgatgtttgaaatcactcacataaaagacaaccacaaatcagataaagacatgcaaaat 11888  T
Q  403 gatcaagatnnnnnnntatatg-aaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat 501  Q
     ||  ||||        || || |||||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11887 tatatagataaaaca--atgtgaaaaaaagttaagattaccttttatgcccaattaatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat 11790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 560 - 710
Target Start/End: Complemental strand, 11708 - 11558
Alignment:
Q  560 atggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagag 659  Q
    ||||||||||||||  |||||||| |||||||| ||||||| || |||||||||||| | |||   ||||| || |||| ||||||| | | ||||||||    
T  11708 atggttcttttttccaatcgatgttgatctcagcgatggtggtatgagagaggttggtagcgggagttgagagataaaactttgttttgagattcaagag 11609  T
Q  660 aatgagaaatgaggatgggaggattattttgtttgattgatgtccatctca 710  Q
    |||| ||| |||||||||||||||| |||||||||||  ||||| ||||||    
T  11608 aatgggaagtgaggatgggaggattcttttgtttgatcaatgtcgatctca 11558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 682
Target Start/End: Complemental strand, 11585 - 11467
Alignment:
Q  564 ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg 663  Q
    ||||||| | ||||| ||||||||||||| | | ||| ||| ||||||||||||| || ||   ||||||||||| | ||| | || ||||| ||||||     
T  11585 ttcttttgtttgatcaatgtcgatctcagcggtagtggtagaagagaggttggcagcgacggccgagggagaaaactgtgtgtgggatttcatgagaata 11486  T
Q  664 agaaatgaggatgggagga 682  Q
    |||||||||||||||||||    
T  11485 agaaatgaggatgggagga 11467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 352 - 506
Target Start/End: Original strand, 42778749 - 42778900
Alignment:
Q  352 gaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcc 451  Q
    ||||||||||| ||||||| ||||||||||| | |||||| | |||||||||||| ||||        || ||||||||||||||||||||||||||||     
T  42778749 gaaaccactcatataaaaggcaaccacaaatcaaagaaaggcgtgcaaaatgatctagataaagaa--atgtgaaaaaagtttggattaccttttttgct 42778846  T
Q  452 caaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca 506  Q
    ||| | |||||||||||||||| || |||||||||||| ||||||||||||||||    
T  42778847 caattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca 42778900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 2371144 - 2371052
Alignment:
Q  40 aaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaaaatatgtacttgtatttgtta 131  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||||||||| || ||||| ||| ||||| |||||| ||||| | |||||||    
T  2371144 aaggtattccatgtactcgtgaaaaaggagaatcaaggtatattgtgatttatttttttagtcgattattcaaatatatacttatgtttgtta 2371052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University