View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7470_low_6 (Length: 710)

Name: NF7470_low_6
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7470_low_6
NF7470_low_6
[»] chr1 (1 HSPs)
chr1 (10-708)||(34092365-34093063)


Alignment Details
Target: chr1 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 10 - 708
Target Start/End: Original strand, 34092365 - 34093063
Alignment:
Q  10 atggacatcacatcatatacaatctcctttgaaaacaaatcacatcatatacagactaagttttctattttttctaccaaaaattatttaatacaaggtt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34092365 atggacatcacatcatatacaatctcctttgaaaacaaatcacatcatatacagactaagttttctattttttctaccaaaaattatttaatacaaggtt 34092464  T
Q  110 aatcaaaatatttatttcatctttaacataacatcgnnnnnnnaaaatatctttcaaatttaattaaaacatcaatattggttttnnnnnnntctttaac 209  Q
    ||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||       ||||||||    
T  34092465 aatcaaaatatttatttaatctttaacataacatcgtttttttaaaatatctttcaaatttaattaaaacatcaaaattggttttaaaaaaatctttaac 34092564  T
Q  210 aagcctacaataaaagattttttaaattaattataattgctcgttaaaaaactgatttataaagtgagatattttatagttcatcctaattcaaatttca 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34092565 aagcctacaataaaagattttttaaattaattataattgctcgttaaaaaactgatttataaagtgagatattttatagttcgtcctaattcaaatttca 34092664  T
Q  310 ataataatattgataggttaatcatctttattcatgggttcgaacatgaaacttcaacgtttcgtattatttggatcaccattatcattttgtctgcaaa 409  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  34092665 ataataatattgataggttaatcacctttattcataggttcgaacatgaaacttcaacgtttcgtattatttggatcaccataatcatttcgtctgcaaa 34092764  T
Q  410 caaaaataaaaagaaagagatataactcttcataaacnnnnnnnnnnnnnnnnnnnaaatacatgattaggacttttctcaatgagaaactttgccaaag 509  Q
    |||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||| ||||||||||||||||    
T  34092765 caaaaataaaaagaaagagatataactcttcataaacttttttatttttagtttttaaatacatgattaggacttttctcaataagaaactttgccaaag 34092864  T
Q  510 tcagattgatattgaataattggctaaacaaatctcacattatatatacacaaccacttgaaataaaagaaacaattacattgtatgcaaatcattatcg 609  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34092865 tcagattgatattgaataattggcaaaacaaatctcacattatatatacacaaccacttgaaataaaagaaacaattacattgtatgcaaatcattatcg 34092964  T
Q  610 ttggctattagagcatatattaattcaaagatgaaaaagacattggtagctagaaaaatgaagaagaggcattaggttaggtatatgtgatgatgtcca 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34092965 ttggctattagagcatatattaattcaaagatgaaaaagacattggtagctagaaaaatgaagaagaggcattaggttaggtaaatgtgatgatgtcca 34093063  T

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