View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7470_low_8 (Length: 625)
Name: NF7470_low_8
Description: NF7470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7470_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 301 - 471
Target Start/End: Complemental strand, 28448152 - 28447982
Alignment:
| Q |
301 |
cccggccccactagcatccatcatcatcgatgtagaggggaggtctgtaggcctgacgcctatagaaatagacaaccactccaacaaaagattgaaggcc |
400 |
Q |
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| T |
28448152 |
cccggccccactagcatccatcatcatcgatgtagaggggaggtctgtaggtctgatgcctatagaaatagacaaccactccaacaaaagattgaaggcc |
28448053 |
T |
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| Q |
401 |
gtaacttccaacgcacaaaataggaaccccagagagaggaacaccgaagccaaggccagccaaagcccaaa |
471 |
Q |
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| T |
28448052 |
gtaacttccaacgcacaaaataggaaccccagagagaggaacaccgaagccaaggccagccaaagcccaaa |
28447982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 16060253 - 16060150
Alignment:
| Q |
44 |
ctcaaagacttcccccagtggcccttctggaacttgcccaggctgcgcagcctctggttgaggtgcgggctctcctccgggctgttccaagtccctaaag |
143 |
Q |
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| T |
16060253 |
ctcaaagacttcccctagtggcccttctggaacttgcccatgctgcgcagcctctggttgaggtgcgggctctcctccgggctgttccaagtccctaaag |
16060154 |
T |
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| Q |
144 |
atag |
147 |
Q |
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|||| |
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| T |
16060153 |
atag |
16060150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 391 - 468
Target Start/End: Complemental strand, 18690684 - 18690607
Alignment:
| Q |
391 |
attgaaggccgtaacttccaacgcacaaaataggaaccccagagagaggaacaccgaagccaaggccagccaaagccc |
468 |
Q |
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| T |
18690684 |
attgaaggttgtaacttccaacgcaaaaactaggaacctcagagagaggaacaccgaagccaaggccaaccaaagccc |
18690607 |
T |
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