View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7471_high_10 (Length: 218)
Name: NF7471_high_10
Description: NF7471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7471_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 16790261 - 16790472
Alignment:
| Q |
1 |
caactatttgcattgattattttggttttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagt |
100 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16790261 |
caactatttgcattgaatattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaaccgttgcggttgcttattcctgcaagt |
16790360 |
T |
|
| Q |
101 |
tatatctcttcatctcttgttattctaaatgaattgccatcgaaagtcacgttacagaataagaagagaggaagatggataacttacaagaataagcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16790361 |
tatatctcttcatctcttgttattctaaatgaattgcccttgaaagtcacgttacagaataagaagagaggaagatggataacttacaagaataagcaac |
16790460 |
T |
|
| Q |
201 |
cacaatgatttg |
212 |
Q |
| |
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|||||||||||| |
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| T |
16790461 |
cacaatgatttg |
16790472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 16791667 - 16791788
Alignment:
| Q |
1 |
caactatttgcattgattattttggttttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagt |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| ||| ||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||| |
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| T |
16791667 |
caactatttgcattgattattttgattttcatctcattgattat-tatattgattctgtagtcattgatcaaaccgttgaggttgcttattcctgcaagt |
16791765 |
T |
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| Q |
101 |
tatatctcttcatctcttgttat |
123 |
Q |
| |
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||||||||||| ||||||||||| |
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| T |
16791766 |
tatatctcttcttctcttgttat |
16791788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 16616810 - 16616689
Alignment:
| Q |
5 |
tatttgcattgattattttggttttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagttata |
104 |
Q |
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|||||||||||| |||||| |||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||| ||||||||| ||||||| |
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| T |
16616810 |
tatttgcattgaccattttgattttcatctcatcgactatgtatattggttttgtagtcattgatcaaaccactgcggttgtttattcctgaaagttatc |
16616711 |
T |
|
| Q |
105 |
tctcttcatctcttgttattct |
126 |
Q |
| |
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||||| |||||||||||||| |
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| T |
16616710 |
cgtcttcctctcttgttattct |
16616689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 16628510 - 16628412
Alignment:
| Q |
5 |
tatttgcattgattattttggttttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagttat |
103 |
Q |
| |
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||||||| ||||| |||||| |||| ||||||||||||||| ||||| |||||||||||||||||| | | ||||||| |||||||||||||||||| |
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| T |
16628510 |
tatttgcgttgatcattttgatttttatctcattgactatgaatattacatctgcagtcattgatcaatccgctgcggttacttattcctgcaagttat |
16628412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 16637391 - 16637293
Alignment:
| Q |
5 |
tatttgcattgattattttggttttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagttat |
103 |
Q |
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||||||| ||||| |||||| |||| ||||||||||||||| ||||| |||||||||||||||||| | | ||||||| |||||||||||||||||| |
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| T |
16637391 |
tatttgcgttgatcattttgatttttatctcattgactatgaatattacatctgcagtcattgatcaatccgctgcggttacttattcctgcaagttat |
16637293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 16792443 - 16792318
Alignment:
| Q |
11 |
cattgattattttggttttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagttatatctctt |
110 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||||||||| ||| |||| ||||||||||||| | ||||||||| |||| || ||||||| |||| |
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| T |
16792443 |
cattgattattttgattttcatttcattgactatgtatataagttttgca-tcattgatcaaaccatggcggttgctcattcttgtaagttatccatctt |
16792345 |
T |
|
| Q |
111 |
catctcttgttattctaaatgaattgc |
137 |
Q |
| |
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| |||||| ||||||| ||||||||| |
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| T |
16792344 |
cctctcttcttattctgtatgaattgc |
16792318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 16792326 - 16792374
Alignment:
| Q |
153 |
tacagaataagaagagaggaagatggataacttacaagaataagcaacc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16792326 |
tacagaataagaagagaggaagatggataacttacaagaatgagcaacc |
16792374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 16790539 - 16790416
Alignment:
| Q |
2 |
aactatttgcattgattattttggttttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagtt |
101 |
Q |
| |
|
||||||| |||||||||||||| |||| || |||||||||||||| || ||| |||| |||||||||||| ||| |||||||||||| || ||||| |
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| T |
16790539 |
aactattcacattgattattttgattttgatttcattgactatgtaaataagttttgca-tcattgatcaaatcattgtggttgcttattcttgtaagtt |
16790441 |
T |
|
| Q |
102 |
atatctcttcatctcttgttattct |
126 |
Q |
| |
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|| ||||| |||||| ||||||| |
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| T |
16790440 |
atccatcttcctctcttcttattct |
16790416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 2 - 159
Target Start/End: Complemental strand, 38877343 - 38877186
Alignment:
| Q |
2 |
aactatttgcattgattattttggttttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagtt |
101 |
Q |
| |
|
||||||| |||| ||||||||| |||| ||||||| | ||||||||||| ||||| |||||||||||||||| |||| |||||||||||||| |||||| |
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| T |
38877343 |
aactattcacattaattattttgatttttatctcataggctatgtatatttgttcttcagtcattgatcaaaccgttgtggttgcttattcctccaagtt |
38877244 |
T |
|
| Q |
102 |
atatctcttcatctcttgttattctaaatgaattgccatcgaaagtcacgttacagaa |
159 |
Q |
| |
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|| ||||| ||||||||||||||| | |||||||| | | |||||| |||| |||| |
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| T |
38877243 |
atccgtcttcctctcttgttattctagacgaattgccgttggaagtcaggttagagaa |
38877186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 38877219 - 38877268
Alignment:
| Q |
156 |
agaataagaagagaggaagatggataacttacaagaataagcaaccacaa |
205 |
Q |
| |
|
||||||| |||||||||||| ||||||||| | |||||||||||||||| |
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| T |
38877219 |
agaataacaagagaggaagacggataacttggaggaataagcaaccacaa |
38877268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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