View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7471_low_1 (Length: 735)

Name: NF7471_low_1
Description: NF7471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7471_low_1
NF7471_low_1
[»] chr1 (2 HSPs)
chr1 (1-722)||(5161271-5161992)
chr1 (670-722)||(5158328-5158380)


Alignment Details
Target: chr1 (Bit Score: 622; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 1 - 722
Target Start/End: Complemental strand, 5161992 - 5161271
Alignment:
Q  1 ttccagcgaatatgaccggtcaatcgacacatgaacaaagacctgtcattagttgtttccataagctctagcagacaatctaaacaaaaaattgtaatag 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||| ||||||||    
T  5161992 ttccagcgaatatgatcggtcaatcgacacatgaacaaagacctatcattagttgtttccataagctctagcagacagtccaaaaaaaaaactgtaatag 5161893  T
Q  101 atgtttatagattaattccattttaaagaaattaannnnnnnn-gttaagtagtccaatgattgaaatctcaccttttaaggtgaataagtgggaaatac 199  Q
    |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161892 atgtttatagattaattccattttaaagaaattaatttttttttgttaagtagtccaatgattgaaatctcaccttttaaggtgaataagtgggaaatac 5161793  T
Q  200 ggattcgcaccccaacactgcatatataatgcaatctccannnnnnnctctcatgttctctaatgtgtcatgtcatcaatctcatccttaaactttgtca 299  Q
    ||||||| |||| | ||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161792 ggattcgaacccga-caccgcatatataatgcaatctccatttttttctctcatgttctctaatgtgtcatgtcatcaatctcatccttaaactttgtca 5161694  T
Q  300 tatctaaaactcaccttttttattcaattgtgtagattccaccattctctcatcaacaaagataatccattcccaataggtagaagcaaaaagcaagaca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161693 tatctaaaactcaccttttttattcaattgtgtagattccaccattctctcatcaacaaagataatccattcccaataggtagaagcaaaaagcaagaca 5161594  T
Q  400 ttgctttccagttcattttctgaaattatacatttgtattgcacgatttaccaaaagcacatatctggaggaacaaaatttccaaactatagaaagtaaa 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5161593 ttgctttccagttcattttctgaaattatacatttgtattgcacgatttaccaaaagcacatatctggatgaacaaaatttccaaactatagaaagtaaa 5161494  T
Q  500 agtagactttgaaaaagggtgccttctatggtgagagagtgtttcatatctcgcacggcatgggagtgagcttatgctatatccgtccctcaactcattc 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161493 agtagactttgaaaaagggtgccttctatggtgagagagtgtttcatatctcgcacggcatgggagtgagcttatgctatatccgtccctcaactcattc 5161394  T
Q  600 ctctccattatgcattttttatgtaaaggtggatatgaatgtcacatagaagagccgagaggagggacagacagaatatttcattgtctagtttaaaaac 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161393 ctctccattatgcattttttatgtaaaggtggatatgaatgtcacatagaagagccgagaggagggacagacagaatatttcattgtctagtttaaaaac 5161294  T
Q  700 aaattgtacatatgaaacaattg 722  Q
    |||||||||||||||||||||||    
T  5161293 aaattgtacatatgaaacaattg 5161271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 670 - 722
Target Start/End: Complemental strand, 5158380 - 5158328
Alignment:
Q  670 acagaatatttcattgtctagtttaaaaacaaattgtacatatgaaacaattg 722  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  5158380 acagaatatttcattgtctagtataaaaacaaattgtacaaatgaaacaattg 5158328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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