View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7471_low_2 (Length: 482)
Name: NF7471_low_2
Description: NF7471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7471_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 28 - 267
Target Start/End: Original strand, 26053824 - 26054064
Alignment:
| Q |
28 |
aagaaccaccggcaatttcctttattttgcatttggaagaagaagaagatgatgggaatggtaaaaagaaccctaaaataaagagtaaggattggatgga |
127 |
Q |
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| T |
26053824 |
aagaaccaccgacaattttctttattttgcgtttggaagaagaagaagatgatgggaatggtaaaaagaaccctaatataaagagtaaggattggatgga |
26053923 |
T |
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| Q |
128 |
gaagacataaatgtaac-nnnnnnnnnatttccaacaaatctcgtcctttaatttacttgttagtccaatggtgtgatacattagggatacaccagtgac |
226 |
Q |
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| T |
26053924 |
gaagacataaatgttacttttttttttatttccaacaaatctcgtcctttaatttacttgttagtccaatggtgtgatatattaggggtacaccagtgac |
26054023 |
T |
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| Q |
227 |
atacttaatttcaacctattttttagcggtatttgtagttt |
267 |
Q |
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| T |
26054024 |
ttgcttaatttcaacctattttttagctgtacttgtagttt |
26054064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 28 - 267
Target Start/End: Original strand, 26073877 - 26074117
Alignment:
| Q |
28 |
aagaaccaccggcaatttcctttattttgcatttggaagaagaagaagatgatgggaatggtaaaaagaaccctaaaataaagagtaaggattggatgga |
127 |
Q |
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| T |
26073877 |
aagaaccaccgacaattttctttattttgcgtttggaagaagaagaagatgatgggaatggtaaaaagaaccctaatataaagagtaaggattggatgga |
26073976 |
T |
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| Q |
128 |
gaagacataaatgtaac-nnnnnnnnnatttccaacaaatctcgtcctttaatttacttgttagtccaatggtgtgatacattagggatacaccagtgac |
226 |
Q |
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| T |
26073977 |
gaagacataaatgttacttttttttttatttccaacaaatctcgtcctttaatttacttgttagtccaatggtgtgatatattaggggtacaccagtgac |
26074076 |
T |
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| Q |
227 |
atacttaatttcaacctattttttagcggtatttgtagttt |
267 |
Q |
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| T |
26074077 |
ttgcttaatttcaacctattttttagctgtacttgtagttt |
26074117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 283 - 467
Target Start/End: Original strand, 25519678 - 25519862
Alignment:
| Q |
283 |
taattatgtgaaaatgtgttggattttaagtgttagtcatggatcaataaattcaaaattagaacatattcataatagagatagtatggaaatatataat |
382 |
Q |
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| T |
25519678 |
taattatgtgaatatgtgttggattttaagtgttagtcatggatcagtaaattcaaaattagaacatattcataatatagatagtatggaaatatataat |
25519777 |
T |
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| Q |
383 |
gactaccctcgtcgccgctgtttagatttataaattaggttttcaccattttattgggcaattattattctaccatgaagtttct |
467 |
Q |
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| T |
25519778 |
gactaccctcgttgccgccgtttagatttataaattaggttttcaccatttcattggacaattattatcctaccatgaagtttct |
25519862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 25528505 - 25528537
Alignment:
| Q |
337 |
aaaattagaacatattcataatagagatagtat |
369 |
Q |
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| T |
25528505 |
aaaattagaacatattcataatagagatagtat |
25528537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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