View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7471_low_4 (Length: 418)
Name: NF7471_low_4
Description: NF7471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7471_low_4 |
 | |
|
| [»] scaffold0070 (3 HSPs) |
| | |
|
| [»] scaffold1415 (1 HSPs) |
| | |
|
| [»] scaffold0830 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 16885167 - 16884773
Alignment:
| Q |
19 |
aggaaggtatctctgaggttaacctattagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactccgaaaagcttatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16885167 |
aggaaggtatctctgaggttaacctattagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactccgaaaagcttatt |
16885068 |
T |
|
| Q |
119 |
gcttgttaaggacaactcacctaaactcctaagttcgcaaacctcgttaatgatggatccttgcagtccattctggtcaagtttcaaagactgaagctta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16885067 |
gcttgttaaggacaactcacctaaactcctaagttcgcaaacctcgttaatgatggatccttgcagtccattatggtcaagtttcaaagactgaagctta |
16884968 |
T |
|
| Q |
219 |
tgtaaacctttaattgtagtagggattggtccatttagatcattgttcctcagagataagcgaatcaggttgctcatatttccgatttctagtggaatat |
318 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16884967 |
tgtaaacctttaattgtagtagggattagtccatttagatcattgttcctcagagataagcgaatcaggttgctcatatttccgatttctagtggaatat |
16884868 |
T |
|
| Q |
319 |
ttccactaattccacaagaatttgcccaaaagttttctacagataagtttccaatggacttgggaagatttgatggtaaactattctctgctact |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16884867 |
ttccactaattccacaagaatttgcccaaaagttttctacagataagtttccaatggacttgggaagatttgatggtaaactattctctgatact |
16884773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 404
Target Start/End: Complemental strand, 5100893 - 5100510
Alignment:
| Q |
21 |
gaaggtatctctgaggttaacctattagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactccgaaaagcttattgc |
120 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
5100893 |
gaaggtatctcagaggttaacctattagatcctatgtgaaactttctaagagaagtcatatttcccaaacatgttggtaacactccaaaaagcttattgc |
5100794 |
T |
|
| Q |
121 |
ttgttaaggacaactcacctaaactcctaagttcgcaaacctcgttaatgatggatccttgcagtccattctggtcaagtttcaaagactgaagcttatg |
220 |
Q |
| |
|
|||| || |||||||| |||||||||| ||| |||| ||| | ||| |||||||||||||| ||||| | | |||| |||||||| ||||| ||||| |
|
|
| T |
5100793 |
ttgtcaaacccaactcactcaaactcctaatttcacaaagctcatcaatcatggatccttgcagcccattgtagccaagattcaaagattgaagtttatg |
5100694 |
T |
|
| Q |
221 |
taaacctttaattgtagtagggattggtccatttagatcattgttcctcagagataagcgaatcaggttgctcatatttccgatttctagtggaatattt |
320 |
Q |
| |
|
||| |||||||||||| ||||||||| |||||||| | |||| | ||||||||||| |||||| |||||| || ||||||||||||| ||||||||| |
|
|
| T |
5100693 |
taaccctttaattgtactagggattgctccatttaaactattgcttctcagagataattgaatcaagttgcttatgtttccgatttctacaggaatattt |
5100594 |
T |
|
| Q |
321 |
ccactaattccacaagaatttgcccaaaagttttctacagataagtttccaatggacttgggaagatttgatggtaaactattc |
404 |
Q |
| |
|
||| ||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||||||| |||||| |||| |||||| |
|
|
| T |
5100593 |
ccattaattccacaagaatctgccaaaaagtgttctacagataagtttgtaatggacttgggaagttttgatagtaagctattc |
5100510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 5081091 - 5081457
Alignment:
| Q |
19 |
aggaaggtatctctgaggttaacctattagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactccgaaaagcttatt |
118 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||| | ||||||||| |
|
|
| T |
5081091 |
aggaaggtatctcagaggctaacctattagatcctatgtaaaactttctaagagaagtcatatttcccaaacatgtcggtaacactcctacaagcttatt |
5081190 |
T |
|
| Q |
119 |
gcttgttaaggacaactcacctaaactcctaagttcgcaaacctcgttaatgatggatccttgcagtccattctggtcaagtttcaaagactgaagctta |
218 |
Q |
| |
|
||||||||| |||||||| |||||| ||| || |||| ||| | |||||||||||||||||| |||| | |||||| | |||||||||||| || |
|
|
| T |
5081191 |
gcttgttaaattcaactcactcaaactcgtaatgtcacaaagctcatcaatgatggatccttgcaggtcattgtagtcaagatccaaagactgaagtttt |
5081290 |
T |
|
| Q |
219 |
tgtaaacctttaattgtagtagggattggtccatttagatcattgttcctcagagataagcgaatcaggttgctcatatttccgatttctagtggaatat |
318 |
Q |
| |
|
||||| ||||||| || | ||||| | |||||||| || || | || |||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5081291 |
tgtaaccctttaacagtctttgggatcgatccatttatattgttcctactaagagataatcgaatcaggttgctcatgtttccgatttctagtggaatat |
5081390 |
T |
|
| Q |
319 |
ttccactaattccacaagaatttgcccaaaagttttctacagataagtttccaatggacttgggaag |
385 |
Q |
| |
|
||||| | ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
5081391 |
ttccattcattccacaagaatttgcccaaaagtgttctaaagttaagtttccaatggacttgggaag |
5081457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 5118454 - 5118060
Alignment:
| Q |
19 |
aggaaggtatctctgaggttaacctattagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactccgaaaagcttatt |
118 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
5118454 |
aggaaggtatcgcagaggttaacctattagatcctatgtgaaactttctaagagaagtcatatttcccaaacatgttggtaacactccagaaagcttatt |
5118355 |
T |
|
| Q |
119 |
gcttgttaaggacaactcacctaaactcctaagttcgcaaacctcgttaatgatggatccttgcagtccattctggtcaagtttcaaagactgaagctta |
218 |
Q |
| |
|
||||| ||| |||| ||| |||||| ||| ||| |||| ||| | ||| |||||||||||||||||||| | |||| | ||| | ||||| ||| |
|
|
| T |
5118354 |
gcttgataaatacaatacactcaaactcttaatttcacaaagctcatcaatcatggatccttgcagtccattgtaaccaagatctaaatattgaagttta |
5118255 |
T |
|
| Q |
219 |
tgtaaacctttaattgtagtagggattggtccatttagatcattgttcctcagagataagcgaatcaggttgctcatatttccgatttctagtggaatat |
318 |
Q |
| |
|
||||| ||||||||| | |||||||| |||||||| |||||| | ||||| |||||| | ||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
5118254 |
tgtaaccctttaattacaccagggattgatccatttaaatcattatccctcaaagataatccaataaggttgctcatgtttctgatttctagtggaatat |
5118155 |
T |
|
| Q |
319 |
ttccactaattccacaagaatttgcccaaaagttttctacagataagtttccaatggacttgggaagatttgatggtaaactattctctgctact |
413 |
Q |
| |
|
||||| ||||||||||||| | |||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||| ||| |||| |
|
|
| T |
5118154 |
ttccaataattccacaagattctgcctgaaagtgttctacggataagtttccaatggacttgggaagttttgatggtaaactattccctgatact |
5118060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 33 - 408
Target Start/End: Original strand, 14413410 - 14413785
Alignment:
| Q |
33 |
gaggttaacctattagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactccgaaaagcttattgcttgttaaggaca |
132 |
Q |
| |
|
||||||||||| |||||||||| ||| | ||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||||| |||| | | |
|
|
| T |
14413410 |
gaggttaacctgttagatcctaagtaaagctttctaagtgaagtcatatttcccaaacatgttggtaacactccaaaaagcttattgcttattaaatata |
14413509 |
T |
|
| Q |
133 |
actcacctaaactcctaagttcgcaaacctcgttaatgatggatccttgcagtccattctggtcaagtttcaaagactgaagcttatgtaaacctttaat |
232 |
Q |
| |
|
|||||| |||||| ||| ||| |||| ||| | ||| ||||||||||| |||| ||| | |||||| ||||| ||||| |||||||| |||||||| |
|
|
| T |
14413510 |
actcactcaaactcttaatttcacaaagctcatcaatcatggatccttgtagtctattgtaaccaagttctaaagattgaagtttatgtaaccctttaat |
14413609 |
T |
|
| Q |
233 |
tgtagtagggattggtccatttagatcattgttcctcagagataagcgaatcaggttgctcatatttccgatttctagtggaatatttccactaattcca |
332 |
Q |
| |
|
|| | |||||||| |||||||| |||||| | || || |||||| | ||||||||||||||| ||||| |||| ||||||||||||||| |||||||| |
|
|
| T |
14413610 |
tgaaccagggattgatccatttaaatcattatcccacaaagataatctaatcaggttgctcatgtttccagtttcaagtggaatatttccattaattcca |
14413709 |
T |
|
| Q |
333 |
caagaatttgcccaaaagttttctacagataagtttccaatggacttgggaagatttgatggtaaactattctctg |
408 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||| |||||| | ||| ||||||||| |
|
|
| T |
14413710 |
caagaatctgcccaaaagtattctaaagataagtttccaatggacctgggaagttttgatagcaaaatattctctg |
14413785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 25312363 - 25312436
Alignment:
| Q |
45 |
ttagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactccgaaaagcttatt |
118 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
25312363 |
ttagatcctatatacaattttctaagagaagtcatatttcccaaacatgttggtaaaactccagaaagcttatt |
25312436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 24874160 - 24874087
Alignment:
| Q |
45 |
ttagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactccgaaaagcttatt |
118 |
Q |
| |
|
|||||||||| || ||| |||||||||||| ||||||||||||| ||||||||||| || || |||||||||| |
|
|
| T |
24874160 |
ttagatcctacgttcaattttctaagagaagtcatatttcccaaacatgttggtaaaacaccagaaagcttatt |
24874087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 25606001 - 25606062
Alignment:
| Q |
45 |
ttagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactcc |
106 |
Q |
| |
|
|||||||||||||| ||| || ||| |||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
25606001 |
ttagatcctatgtataaccttataatagaactcatatttcccaaacatgttggtaaaactcc |
25606062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 25477022 - 25477080
Alignment:
| Q |
42 |
ctattagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaa |
100 |
Q |
| |
|
|||||||||||||||| | | ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
25477022 |
ctattagatcctatgtctatcattctaagagaagtcatattttccaagcatgttggtaa |
25477080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 25716556 - 25716618
Alignment:
| Q |
44 |
attagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactcc |
106 |
Q |
| |
|
||||||||| |||| ||| ||||||||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
25716556 |
attagatccaatgttcaatattctaagagaagtcatatttcccaaacatgttggtaaaactcc |
25716618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 22899502 - 22899433
Alignment:
| Q |
49 |
atcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactccgaaaagcttatt |
118 |
Q |
| |
|
|||||||||| || ||||| |||||| |||| |||||||| ||||||||||| || || ||||||||||| |
|
|
| T |
22899502 |
atcctatgtataattttcttagagaagtcatgtttcccaaacatgttggtaaaacaccaaaaagcttatt |
22899433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 25342344 - 25342417
Alignment:
| Q |
45 |
ttagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactccgaaaagcttatt |
118 |
Q |
| |
|
|||||||||| || ||| |||||||||||| ||||||||||| | ||||||||||| || || |||||||||| |
|
|
| T |
25342344 |
ttagatcctacgttcaattttctaagagaagtcatatttcccgaacatgttggtaaaacaccagaaagcttatt |
25342417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 25571247 - 25571320
Alignment:
| Q |
45 |
ttagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactccgaaaagcttatt |
118 |
Q |
| |
|
|||||||||| || ||| |||||||||||| ||||||||||| | ||||||||||| || || |||||||||| |
|
|
| T |
25571247 |
ttagatcctacgttcaattttctaagagaagtcatatttccctaacatgttggtaaaacaccagaaagcttatt |
25571320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 35780 - 35707
Alignment:
| Q |
45 |
ttagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactccgaaaagcttatt |
118 |
Q |
| |
|
|||||||||| || ||| |||||||||||| ||||||||||||| ||||||||||| || || |||||||||| |
|
|
| T |
35780 |
ttagatcctacgttcaattttctaagagaagtcatatttcccaaacatgttggtaaaacaccagaaagcttatt |
35707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 49262 - 49207
Alignment:
| Q |
45 |
ttagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaa |
100 |
Q |
| |
|
|||||||| ||||| ||| || ||| |||||||||||||||||| ||||||||||| |
|
|
| T |
49262 |
ttagatccaatgtataaccttataatagaactcatatttcccaaacatgttggtaa |
49207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 15740 - 15679
Alignment:
| Q |
45 |
ttagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactcc |
106 |
Q |
| |
|
|||||||| ||||| ||| || ||| |||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
15740 |
ttagatccaatgtataaccttataatagaactcatatttcccaaacatgtcggtaaaactcc |
15679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1415 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1415
Description:
Target: scaffold1415; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 400 - 461
Alignment:
| Q |
45 |
ttagatcctatgtacaactttctaagagaactcatatttcccaagcatgttggtaacactcc |
106 |
Q |
| |
|
|||||||| ||||| ||| || ||| |||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
400 |
ttagatccaatgtataaccttataatagaagtcatatttcccaaacatgttggtaaaactcc |
461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 3229 - 3181
Alignment:
| Q |
45 |
ttagatcctatgtacaactttctaagagaactcatatttcccaagcatg |
93 |
Q |
| |
|
||||||||||||| ||| ||||||||| || ||||||||||||| |||| |
|
|
| T |
3229 |
ttagatcctatgtccaaatttctaagaaaagtcatatttcccaaacatg |
3181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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