View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7471_low_6 (Length: 261)
Name: NF7471_low_6
Description: NF7471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7471_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 52750694 - 52750923
Alignment:
| Q |
21 |
tccgctactatcgttgttgttgtcgttgacagaagcaacaaatcaagctcaattt-catgttcctcttcttctttcctcttcttcttttggttcgcagga |
119 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
52750694 |
tccgctactgtcgttgttgttgtcgttggcagaagcaacaaatcaagctcaattttcatgttcctcttcttctttcctcttcttcttttggctcgtagga |
52750793 |
T |
|
| Q |
120 |
gcagtctcattcgatgagtctctcaccaccggcgagttctagtccccggagaacacaaaacaaaaatcaccacaagcctcaccaagtcacaaccagagag |
219 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52750794 |
gcagtctcattcgatgagtctctcaccaccgacgagttctagtccccgaagaacacaaaacaaaaatcaccacaagcctcaccaagtcacaaccagagag |
52750893 |
T |
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| Q |
220 |
agattttgatgaagatgtatacacccttct |
249 |
Q |
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||||||||||||||||||||||| |||||| |
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| T |
52750894 |
agattttgatgaagatgtatacatccttct |
52750923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 33389713 - 33389931
Alignment:
| Q |
21 |
tccgctactatcgttgttgttgtcgttgacagaagcaacaaatcaagctcaatttcatgttcctcttcttctttcctcttcttcttttggttcgcaggag |
120 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| |
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| T |
33389713 |
tccgctactgtcgttgttgttgtcgttgtcagaagcaacaaatcaagctcaatttcttgttcctcttcttcttt------------ttggctcgcaggag |
33389800 |
T |
|
| Q |
121 |
cagtctcattcgatgagtctctcaccaccggcgagttctagtccccggagaacacaaaacaaaa--atcaccacaagcctcaccaagtcacaaccagaga |
218 |
Q |
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| T |
33389801 |
cagtctcatttgatgagtctctcaccaccggcgagttctagtccccagagaacataaaaaaaaaaaatcaccacaagcctcaccaagtcataaccagaga |
33389900 |
T |
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| Q |
219 |
gagattttgatgaagatgtatacacccttct |
249 |
Q |
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||||||||||||||||||||||||| ||||| |
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| T |
33389901 |
gagattttgatgaagatgtatacactcttct |
33389931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 30 - 243
Target Start/End: Original strand, 3093658 - 3093856
Alignment:
| Q |
30 |
atcgttgttgttgtcgttgacagaagcaacaaatcaagctcaatttcatgttcctcttcttctttcctcttcttcttttggttcgcaggagcagtctcat |
129 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||| |
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| T |
3093658 |
atcgtcgtcgttgtcgttgacagaagcaacaaatcaagctcaatttcctgttcc-------------tcttcttcttttggctcgcatgagcagtctcat |
3093744 |
T |
|
| Q |
130 |
tcgatgagtctctcaccaccggcgagttctagtccccggagaacacaaaacaaaaatcaccacaagcctcaccaagtcacaaccagagagagattttgat |
229 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
3093745 |
tcgatgagtctctcaccaccggtgagttctagtcctcggagaacacaaaacaaaaatcaccacaagcctcaccaagtcataacc--agagagattttgat |
3093842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 214
Target Start/End: Original strand, 30829338 - 30829498
Alignment:
| Q |
39 |
gttgtcgttgacagaagcaacaaatcaagctcaatttcatgttcctcttcttctttcctcttcttcttttggttcgcaggagcagtctcattcgatgagt |
138 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||||||||||| |||| |||||||||| |||| ||||||||||||||||| |||| |
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| T |
30829338 |
gttgtcgttaacagaagcaataaatcaagctcaatttcatgttcttctt-------------cttcttttggctcgccggagcagtctcattcgaggagt |
30829424 |
T |
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| Q |
139 |
ctctcaccaccggcgagttctagtccccggagaacacaaaacaaaaatcaccacaagcctcaccaagtcacaacca |
214 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||| |||||| || ||||||||||||||||||| |
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| T |
30829425 |
ctctcaccgccggcgagttctagtccccggagaacac--aacaaaagtcaccagaaacctcaccaagtcacaacca |
30829498 |
T |
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