View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7472_high_17 (Length: 248)
Name: NF7472_high_17
Description: NF7472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7472_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 5568669 - 5568901
Alignment:
| Q |
1 |
caagatgatttactttcattcaaatgagttggaaagctcattgttttatcatttgtcaagaggaattctaggtcattcttcataccaagaagctcattac |
100 |
Q |
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| T |
5568669 |
caagatgatttactttcattcaaatgagttggaaagcccattgttttatcatttgtcaagaggaattctaggtcattcttcataccaagaagctcattac |
5568768 |
T |
|
| Q |
101 |
tttgaatgcagtgtcaagtgtttggttatttttaatgccttttgtgatggtattgaacaaattctcctaaggcagaggcagaagttgttggagattgtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5568769 |
tttgaatgcagtgtcaagtgtttggttatttttaatgccttttgtgatggtattgaacaaattctcctaaggcagaggcagaagttgttggagattgtga |
5568868 |
T |
|
| Q |
201 |
tttatgcattgcgactcaaagtaacattggtga |
233 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
5568869 |
tttatacattgcgactcaaagtaacattggtga |
5568901 |
T |
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