View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7472_high_3 (Length: 411)
Name: NF7472_high_3
Description: NF7472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7472_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 51 - 363
Target Start/End: Original strand, 30166072 - 30166389
Alignment:
| Q |
51 |
ccaaatggcggtgtataaggagtctctgctttcactccccgatggcactgagcaagcttaagatgactagtggtaccaaactagaaga-----atttgat |
145 |
Q |
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| T |
30166072 |
ccaaatggcggtgtatatagagtctctgctttcactccccgatggcactgagcaagcttaagataactagtgataccaaacaataagaatttgatttgat |
30166171 |
T |
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| Q |
146 |
tgtgaaatattcatatttaccattttactgatatctatcttgtattatcaactcttggtatcatgaagcatgggaagtgataggcagaatactgaaactg |
245 |
Q |
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| T |
30166172 |
tgtgaaatatttgtattttccattttactgatattgatcttgtattatgaactcttggtatcatgaagcatgggaagtgataggcagaatactgaaactg |
30166271 |
T |
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| Q |
246 |
caagaagagataacataaatgagagtagtgttgatctttatcagcagctcaaatgccagttcacaaatcacattgatgtgctgttgcttccttgctgctc |
345 |
Q |
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| T |
30166272 |
ggaaaagacataacataatcgagagtagaggtgatctttatcagcagctcaaatgccagttcacaaatcacatagctctgctgtttcctccttgcagctc |
30166371 |
T |
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| Q |
346 |
cttactgtagatgaaatt |
363 |
Q |
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| T |
30166372 |
cttagtgaagatgaaatt |
30166389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 30130748 - 30130576
Alignment:
| Q |
51 |
ccaaatggcggtgtataaggagtctctgctttcactccccgatggcactgagcaagcttaaga---tgactagtggtaccaaactagaagaatttgattg |
147 |
Q |
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| T |
30130748 |
ccaaatggcggtgtatacagagtctcttctttcattccctagcggcactgatgaagcttaagaagatgactaatgataacaaacatgaagaatgtgattg |
30130649 |
T |
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| Q |
148 |
tgaaatattcatatttaccatt--ttactg-atatctatcttgtattatcaactcttggtatcatgaagcatg |
217 |
Q |
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| T |
30130648 |
tgaaatattcacatttaccatttcttaatgtttatctattttgcattatgaactcttgctatcatgaagcatg |
30130576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 59 - 375
Target Start/End: Complemental strand, 43164513 - 43164193
Alignment:
| Q |
59 |
cggtgtataaggagtctctgctttcactccccgatggcactgagcaagcttaagatgactagtggtaccaaactagaagaatttgattgtgaaatattca |
158 |
Q |
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| T |
43164513 |
cggtgtatacagaatctctgctttcactccctgatggcactgagcaagcttaagatgaccagtgataacaaactagaagaatttgattgtgaaatattca |
43164414 |
T |
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| Q |
159 |
tatttaccattttactgatatctatcttgtattatcaactcttggt----atcatgaagcatgggaagtgataggcagaatactgaaactgcaagaagag |
254 |
Q |
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| T |
43164413 |
tatttacctttttagtgatatctatcttgtatcatgaactcttggttggaatcataaagcatgtgaagtgataggcaaaatagtgaaattgcaagaagac |
43164314 |
T |
|
| Q |
255 |
ataacataaatgagagtagtgttgatctttatcagcagctcaaatgccagttcacaaatcacattgatgtgctgttgcttccttgctgctccttactgta |
354 |
Q |
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| T |
43164313 |
ataacataattgagagtagagttgatctttatcagcagctcaaatgttggttcacgaatcgcgtagctctgccgtttcttccttgcagctccttagcgaa |
43164214 |
T |
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| Q |
355 |
gatgaaattcgtttactcatt |
375 |
Q |
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|||||| |||||||||||||| |
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| T |
43164213 |
gatgaatttcgtttactcatt |
43164193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 41310807 - 41310714
Alignment:
| Q |
107 |
cttaagatgactagtggtaccaaactagaagaatttgattgtgaaatattcatatttaccattttactgatatctatcttgtattatcaactct |
200 |
Q |
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| T |
41310807 |
cttaagatgactagtgataccaaactagaagaatttgattgtgaaatattggtatttatcattttactgatatctatcttgtattatgaactct |
41310714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 49040628 - 49040579
Alignment:
| Q |
64 |
tataaggagtctctgctttcactccccgatggcactgagcaagcttaaga |
113 |
Q |
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| T |
49040628 |
tatacggagtctctgctttcactccccaatgacagttagcaagcttaaga |
49040579 |
T |
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