View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7472_high_7 (Length: 377)
Name: NF7472_high_7
Description: NF7472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7472_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 39888911 - 39889260
Alignment:
| Q |
9 |
gaagaatatctggaattgttgatgcccctaatgcttgtgcaacattggccatccctacaactatatttgaccaggtaaatatacatgtcaactttcaact |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39888911 |
gaagaatatctggaattgttgatgcccctaatgcttgtgcaacattggccatccctacagctatatttgaccaggtaaatatacatgtcaactgtcaact |
39889010 |
T |
|
| Q |
109 |
cccctaatgttaaataaaactatgtctaatacattggctatgtataacaaaattctcaatcatattaggatgcttgattgtgattaaatactgcagtttt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39889011 |
cccctaatgttaaataaaactatgtctaatacattggctatgtataacaaaattctcaatcatattaggatgcttgattgtgattaaatactgcagtttt |
39889110 |
T |
|
| Q |
209 |
ttaagatgattcattttatatataacttttaataatatttatgttgcttgatgtttttgcaggatattcgtcctaaaaataacaaagtaccaattggacc |
308 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39889111 |
ttaagatgatt-attttatatataacttttaataatatttatgttgcttgatgtttttgcaggatattcgtcctaaaaataacaaagtaccaattggacc |
39889209 |
T |
|
| Q |
309 |
ccgccttgtaaagaaaccagatgtcttcaaatgcacttatgatggaaactt |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39889210 |
ccgccttgtaaagaaaccagatgtcttcaaatgcacttatgatggaaactt |
39889260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University