View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7472_low_10 (Length: 353)
Name: NF7472_low_10
Description: NF7472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7472_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 47473376 - 47473694
Alignment:
| Q |
18 |
actatatggtacaattccaataccaagctctctgtatcaacaaaagctttaaattagtgaagtcacatttaacacaaacaagcaaccaggagcaaatggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473376 |
actatatggtacaattccaataccaagctctctgtatcaacaaaagctttaaattagtgaagtcacatttaacacaaacaagcaaccaggagcaaatggt |
47473475 |
T |
|
| Q |
118 |
tccttttccttaaccctcttttcaagtaacacttaaccaatgaacttggagaggaactcaaactaacctgcagagaggaactatctcctcctcaatgtcg |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473476 |
tcctattccttaaccctcttttcaagtaacacttaaccaatgaacttggagaggaactcaaactaacctgcagagaggaactatctcctcctcaatgtcg |
47473575 |
T |
|
| Q |
218 |
cgagtccaaagagaccactctatttgtacagcagtgatgggatgaacagcatgcgctctccttattgtatcggggctggcttcagatagtccaatatact |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47473576 |
cgagtccaaagagaccactctatttgtacagcagtgatgggatgaacagcatgcgctctccttattgtatcagggctggcttcagatagtccaatatact |
47473675 |
T |
|
| Q |
318 |
taacttttccctcttccac |
336 |
Q |
| |
|
||||||||||||||||||| |
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| T |
47473676 |
taacttttccctcttccac |
47473694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 47486090 - 47486409
Alignment:
| Q |
18 |
actatatggtacaattccaataccaagctctctgtatcaacaaaagctttaaattagtgaagtc-----acatttaacacaaacaagcaaccaggagcaa |
112 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| | |||||| |
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| T |
47486090 |
actatatgttacaattccaataccaagctctctgtatcaacaaaagctttaaataagtgaagtagtacaacatttaacacaaacatccaa--aagagcaa |
47486187 |
T |
|
| Q |
113 |
atggttccttttccttaaccctcttttcaagtaacacttaaccaatgaacttggagaggaactcaaactaacctgcagagaggaactatctcctcctcaa |
212 |
Q |
| |
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| |||| |||| ||||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||| ||| || ||||||||||| ||||||| |
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| T |
47486188 |
acagttctatttctttaaccctcttttcaagtaac--ttaatcaaagaacttggacaggaactcaaactaaccggcatagtggaactatctcatcctcaa |
47486285 |
T |
|
| Q |
213 |
tgtcgcgagtccaaagagaccactctatttgtacagcagtgatgggatgaacagcatgcgctctccttattgtatcggggctggcttcagatagtccaat |
312 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||| ||||| ||||||||||| || || |
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| T |
47486286 |
tgtcacgagtccaaagagaccactccatttgtacagctgtgatgggatgaatggtgtgcgctctccttattgtatctgggctagcttcagatagccctat |
47486385 |
T |
|
| Q |
313 |
atacttaacttttccctcttccac |
336 |
Q |
| |
|
|||||| |||||||| |||||||| |
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|
| T |
47486386 |
atacttcacttttccttcttccac |
47486409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 158 - 336
Target Start/End: Original strand, 47476814 - 47476992
Alignment:
| Q |
158 |
tgaacttggagaggaactcaaactaacctgcagagaggaactatctcctcctcaatgtcgcgagtccaaagagaccactctatttgtacagcagtgatgg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||| ||| ||||| | |
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|
| T |
47476814 |
tgaacttggagaggaactcaaactaacctgcagagaggaactatctcgttctcaatgtcgcgagtccagagagaccactctatttgtaaagctgtgatag |
47476913 |
T |
|
| Q |
258 |
gatgaacagcatgcgctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccac |
336 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47476914 |
gatgaacagcatgtgctctccttattgtatcggggctggcttcagatagtccaatatatttaacttttccctcttccac |
47476992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 47476620 - 47476703
Alignment:
| Q |
18 |
actatatggtacaattccaataccaagctctctgtatcaacaaaagctttaaattagtgaagtcacatttaacacaaacaagcaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| || || || |||||||||||| |||| |
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| T |
47476620 |
actatatggtacaattccaataccaagctctctatatcaacaaaagcttgaaataagtaaaatctca-ttaacacaaacatgcaa |
47476703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 333
Target Start/End: Original strand, 47469234 - 47469359
Alignment:
| Q |
208 |
ctcaatgtcgcgagtccaaagagaccactctatttgtacagcagtgatgggatgaacagcatgcgctctccttattgtatcggggctggcttcagatagt |
307 |
Q |
| |
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|||||| || ||||||||||||||||| || ||||| |||||||| ||||||||||||||||| || || || |||||||| | || || ||||||| | |
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| T |
47469234 |
ctcaatttcacgagtccaaagagaccattccatttgaacagcagtaatgggatgaacagcatgtgcccttctgattgtatcagtactagcctcagataat |
47469333 |
T |
|
| Q |
308 |
ccaatatacttaacttttccctcttc |
333 |
Q |
| |
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|| || ||||||| ||||||||||| |
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| T |
47469334 |
cctatgtacttaatctttccctcttc |
47469359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 17386521 - 17386566
Alignment:
| Q |
41 |
caagctctctgtatcaacaaaagctttaaattagtgaagtcacatt |
86 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
17386521 |
caagctctctgtatcaacaaaaactttaaatcagtgaagtcacatt |
17386566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 44903750 - 44903806
Alignment:
| Q |
46 |
tctctgtatcaacaaaagctttaaattagtgaagtcacatttaacacaaacaagcaa |
102 |
Q |
| |
|
|||||| |||||||||| |||||||||||| |||||||||| |||||||||| |||| |
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|
| T |
44903750 |
tctctgcatcaacaaaaactttaaattagtaaagtcacattcaacacaaacatgcaa |
44903806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 49091605 - 49091666
Alignment:
| Q |
41 |
caagctctctgtatcaacaaaagctttaaattagtgaagtcacatttaacacaaacaagcaa |
102 |
Q |
| |
|
|||| |||||| |||||||||| |||||||||||| || ||||||| |||||||||| |||| |
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|
| T |
49091605 |
caagttctctgcatcaacaaaaactttaaattagtaaattcacattcaacacaaacatgcaa |
49091666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 17225952 - 17225908
Alignment:
| Q |
58 |
caaaagctttaaattagtgaagtcacatttaacacaaacaagcaa |
102 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| |||| |
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|
| T |
17225952 |
caaaagctttaaattagtgaaaccacattcaacacaaacacgcaa |
17225908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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