View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7472_low_11 (Length: 349)
Name: NF7472_low_11
Description: NF7472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7472_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 19049881 - 19049530
Alignment:
| Q |
1 |
aattttcacaggcaatcactagtaatttgtagttcagtcgaaagacaagtaaagtgtgattaaagattgtaccacctaaaaattgatcttagcattcttc |
100 |
Q |
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| T |
19049881 |
aattttcacaggcaatcactagtaatttgtagttcaatcgaaaggtaagtaaaatgtgactaaagattgtaccacctaagaattgatcttagcattcttc |
19049782 |
T |
|
| Q |
101 |
cgaacaattcatatttaaatggaactcatcaa---------------------tcggttttgatttagcatttgctgtttatgctatcttactagtgttt |
179 |
Q |
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| T |
19049781 |
cgaacaattcatgtttaaatggaactcatcaaccacttaagttaattattcaatcggttttgatttagcatttgctgtttatgctatcttactagtgttt |
19049682 |
T |
|
| Q |
180 |
tgattggaacaatttgctggtttggtgcaatcatttggaggaacaattattgttttggcttaatcatcataattcatgagtaaatggataatgggattag |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19049681 |
tgattggaacaatttgctggtttggtgcaatcatttggaggaacaattattgttttggcttaatcatcataattcatgagtaaaaggataatgggattag |
19049582 |
T |
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| Q |
280 |
attttgtgtcctacaacctttgaataatggttccaattttccttacctattt |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19049581 |
attttgtgtcctacaacctttgaataatggttccaattttccttacctattt |
19049530 |
T |
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