View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7472_low_14 (Length: 313)

Name: NF7472_low_14
Description: NF7472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7472_low_14
NF7472_low_14
[»] chr8 (13 HSPs)
chr8 (19-313)||(32635902-32636195)
chr8 (50-166)||(6307548-6307667)
chr8 (240-308)||(6307737-6307805)
chr8 (242-313)||(13167764-13167835)
chr8 (243-313)||(5648055-5648125)
chr8 (56-173)||(5554172-5554292)
chr8 (48-166)||(5604547-5604668)
chr8 (48-166)||(5630702-5630823)
chr8 (56-152)||(13167921-13168020)
chr8 (48-141)||(9862175-9862271)
chr8 (245-305)||(5604740-5604800)
chr8 (245-305)||(5630570-5630630)
chr8 (260-302)||(5554047-5554089)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 32636195 - 32635902
Alignment:
Q  19 actctactatcatttcttcattacattgggtttcttcaataaagaatctaaatgtaagctttggattgtaattgatgctcacatcattaatgagttttgt 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||    
T  32636195 actctactatcatttcttcattacgttgggtttcttcaataaagaatctaaaagtaagctttggattgtaattgatgatcacatcattaatgaattttgt 32636096  T
Q  119 ttcttcaactgcttccattatctgtttgcaactttgtggatcataccacaaaaccgcatatgttgtg-catcatgtggattgaagcattaattaaatcgc 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||  || ||| |||| |||||||||||||||||||||||| ||||| |    
T  32636095 ttcttcaactgcttccattatctgtttgcaacttcgtggatcataccacaaaac--cacatgatgtgacatcatgtggattgaagcattaataaaatcac 32635998  T
Q  218 aggacttgtggtagaagttggatcttgtgaaacttgttatatagatcctttcacctgaattattgtccaagtagcactcacatccaaaatctacac 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32635997 aggacttgtggtagaagttggatcttgtgaaacttgttatatagatcctttcacctgaactattgtccaagtagcactcacatccaaaatctacac 32635902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 6307548 - 6307667
Alignment:
Q  50 ttcttcaataaagaatctaaatgtaagctttggattgtaattgatgct---cacatcattaatgagttttgtttcttcaactgcttccattatctgtttg 146  Q
    ||||||||||||||||||||||||||||||||||||| || |  ||||   |||||||||||||  |||| |||||||||||||| |||||||||| |||    
T  6307548 ttcttcaataaagaatctaaatgtaagctttggattgcaactagtgctgttcacatcattaatggattttatttcttcaactgctgccattatctgcttg 6307647  T
Q  147 caactttgtggatcatacca 166  Q
    ||||||  | ||||||||||    
T  6307648 caacttgcttgatcatacca 6307667  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 6307737 - 6307805
Alignment:
Q  240 tcttgtgaaacttgttatatagatcctttcacctgaattattgtccaagtagcactcacatccaaaatc 308  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||    
T  6307737 tcttgtgaaacttgttatatagattctttcacctgaactattgtccaaatagcactcacatccaaaatc 6307805  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 13167835 - 13167764
Alignment:
Q  242 ttgtgaaacttgttatatagatcctttcacctgaattattgtccaagtagcactcacatccaaaatctacac 313  Q
    |||||||||||||||||||||   ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  13167835 ttgtgaaacttgttatatagactttttcaccagaattattgtccaagaagcactcacatccaaaatctacac 13167764  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 5648125 - 5648055
Alignment:
Q  243 tgtgaaacttgttatatagatcctttcacctgaattattgtccaagtagcactcacatccaaaatctacac 313  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||| | |||||||||| ||||||    
T  5648125 tgtgaaacttgttatacagatcctttcacctgaactattgtccaagtagcatttacatccaaaacctacac 5648055  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 5554292 - 5554172
Alignment:
Q  56 aataaagaatctaaatgtaagctttggattgtaa---ttgatgctcacatcattaatgagttttgtttcttcaactgcttccattatctgtttgcaactt 152  Q
    |||||||||| |||| ||||||||||||| ||||    || || |||| ||| |||||| |||| ||| ||||||||| ||||||||||| |||||||||    
T  5554292 aataaagaatgtaaacgtaagctttggatcgtaactggtgttgttcacgtcagtaatgacttttatttgttcaactgcatccattatctgcttgcaactt 5554193  T
Q  153 tgtggatcataccacaaaacc 173  Q
    | |||||||||||| ||||||    
T  5554192 tctggatcataccataaaacc 5554172  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 166
Target Start/End: Original strand, 5604547 - 5604668
Alignment:
Q  48 gtttcttcaataaagaatctaaatgtaagctttggattgtaattgatgct---cacatcattaatgagttttgtttcttcaactgcttccattatctgtt 144  Q
    ||||| |||||||||||| ||||||||||||||||| ||||| |  ||||   | ||||| |||||  |||||||| ||||||||| ||||||||||| |    
T  5604547 gtttcatcaataaagaatgtaaatgtaagctttggagtgtaactcgtgctgttcccatcactaatggcttttgtttgttcaactgcatccattatctgct 5604646  T
Q  145 tgcaactttgtggatcatacca 166  Q
    ||||||||   |||||||||||    
T  5604647 tgcaacttctaggatcatacca 5604668  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 166
Target Start/End: Complemental strand, 5630823 - 5630702
Alignment:
Q  48 gtttcttcaataaagaatctaaatgtaagctttggattgtaattgatgct---cacatcattaatgagttttgtttcttcaactgcttccattatctgtt 144  Q
    ||||| |||||||||||| ||||||||||||||||| ||||| |  ||||   | ||||| |||||  |||||||| ||||||||| ||||||||||| |    
T  5630823 gtttcatcaataaagaatgtaaatgtaagctttggagtgtaactcgtgctgttcccatcactaatggcttttgtttgttcaactgcatccattatctgct 5630724  T
Q  145 tgcaactttgtggatcatacca 166  Q
    ||||||||   |||||||||||    
T  5630723 tgcaacttctaggatcatacca 5630702  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 13168020 - 13167921
Alignment:
Q  56 aataaagaatctaaatgtaagctttggattgtaatt---gatgctcacatcattaatgagttttgtttcttcaactgcttccattatctgtttgcaactt 152  Q
    |||||||||||||||||||||||||||||||||| |   | || |||||||||||  |  |||| ||||||||| |||||||||||| || |||||||||    
T  13168020 aataaagaatctaaatgtaagctttggattgtaactagtgttgttcacatcattatcggcttttatttcttcaaatgcttccattatttgcttgcaactt 13167921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 9862175 - 9862271
Alignment:
Q  48 gtttcttcaataaagaatctaaatgtaagctttggattgta---attgatgctcacatcattaatgagttttgtttcttcaactgcttccattatct 141  Q
    ||||| |||||||||||||||||||||||||||||||||||   | |  || ||||||||||||  | ||||||||||| ||||| ||| |||||||    
T  9862175 gtttcatcaataaagaatctaaatgtaagctttggattgtaactagttctgttcacatcattaactacttttgtttctttaactgtttctattatct 9862271  T

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Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 5604740 - 5604800
Alignment:
Q  245 tgaaacttgttatatagatcctttcacctgaattattgtccaagtagcactcacatccaaa 305  Q
    |||||||||||||| | || |||||||||||| |||| ||||||| |||||||||||||||    
T  5604740 tgaaacttgttatacatattctttcacctgaactattttccaagttgcactcacatccaaa 5604800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 5630630 - 5630570
Alignment:
Q  245 tgaaacttgttatatagatcctttcacctgaattattgtccaagtagcactcacatccaaa 305  Q
    |||||||||||||| | || |||||||||||| |||| ||||||| |||||||||||||||    
T  5630630 tgaaacttgttatacatattctttcacctgaactattttccaagttgcactcacatccaaa 5630570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 5554089 - 5554047
Alignment:
Q  260 agatcctttcacctgaattattgtccaagtagcactcacatcc 302  Q
    |||| |||||||||||| |||||||||||||||||||| ||||    
T  5554089 agattctttcacctgaactattgtccaagtagcactcatatcc 5554047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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