View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7472_low_17 (Length: 272)
Name: NF7472_low_17
Description: NF7472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7472_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 44374096 - 44374357
Alignment:
| Q |
1 |
taccgttgggccccagcagtacctaactac-gctgaattcatttctcaatttatgcctattccttattttcataactcaccatgaataaggaacttgcag |
99 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44374096 |
taccgttgggccccagcagtagctaactaccgctgaattcatttctcaatttatgcctattccttattttcataactcaccatgaataaggaacttgcag |
44374195 |
T |
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| Q |
100 |
aatcgtgaattgcaaaatcgtgaattagggaataagaaatttggaattatataaagtttggggttgttgattactgaggatatatataaattaagaaatt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44374196 |
aatcgtgaattgcaaaatcgtgaattagggaataagaaatttggaattatataaagtttggggttgttgattactgaggatatatataaattaagaattt |
44374295 |
T |
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| Q |
200 |
aggaatctgcactttcnnnnnnnngacacaagaaattaggaatctgcacttgtcttcttcat |
261 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44374296 |
aggaatctgcactttcttttttttgacacaagaaattaggaatctgcacttgtcttcttcat |
44374357 |
T |
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