View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7472_low_2 (Length: 463)
Name: NF7472_low_2
Description: NF7472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7472_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 6284167 - 6283947
Alignment:
| Q |
9 |
attatactattatataaaattttaaacaattatagatttcaaattgttcaaaacaacttctaaattctccaacatctcaaacctcgaatattttagggtt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6284167 |
attatactattatataaaattttaaacaattatagattttaaattgttcaaaacaacttttaaattctccaacatctcaaacctcgaatattttagggtt |
6284068 |
T |
|
| Q |
109 |
ttatttagttatacggactacccacaatctatgtgggctagcctaaattcaaaacagattcaacgaagcaagct-aaagaaacaaaaattactctgaaca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
6284067 |
ttatttagttatacggactacccacaatctatgtgggctagcctaaattcaaaacagattcaacgaagcaagctaaaagaaacaaaaattactctaaaca |
6283968 |
T |
|
| Q |
208 |
aaattttaagatccaaaccta |
228 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
6283967 |
aaattttaagatccaaaccta |
6283947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 218 - 449
Target Start/End: Complemental strand, 6283332 - 6283101
Alignment:
| Q |
218 |
atccaaacctatatactttttcggactttggtggacttttgcccattttcccatcctaatttattatggtgtattattacaattatatnnnnnnnnnnnn |
317 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6283332 |
atccaaacctatatactctttcggactttggtggacttttgcccattttcccatcctaatttaatatggtgtattattacaattatataaaaaaaaaaaa |
6283233 |
T |
|
| Q |
318 |
nntattatagttattgaatttataaaattttatatgaagggttttagattttagtnnnnnnngtttgattttgtaacttaagagcaagcaaaagttaaaa |
417 |
Q |
| |
|
| ||||||||||||| ||||||||| ||||||| | |||||||| | |||| ||||||||||||||| |||||| ||| |||||| ||| |
|
|
| T |
6283232 |
aatcatatagttattgaacttataaaatcttatatgtaaggttttagcatatagtgaaaaaagtttgattttgtaacctaagagacagccaaagtttaaa |
6283133 |
T |
|
| Q |
418 |
atagtaattagtgtaacataaatgtctttcca |
449 |
Q |
| |
|
||||| |||||||| |||| ||| || ||||| |
|
|
| T |
6283132 |
atagtcattagtgttacattaatttccttcca |
6283101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University