View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7472_low_4 (Length: 409)
Name: NF7472_low_4
Description: NF7472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7472_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 21 - 382
Target Start/End: Original strand, 25468391 - 25468752
Alignment:
| Q |
21 |
acacaatgacttttggaaccattaacagtagaattttacataaatcagtttaaaacaaaattgtactattttgcattatgataatttctaattgtttttt |
120 |
Q |
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| T |
25468391 |
acacaatgacttttggaaccattaacagtagaatttcacataaatcagtttaaaacacaattgtactattttgcattatgataatttctaattgtttttt |
25468490 |
T |
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| Q |
121 |
gtcactttagtccatggatccacatcatacatccttgattgtcaaaacaattgtcagctcatctttgaatggtcaattttaacgtcaaggacttaattgg |
220 |
Q |
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| T |
25468491 |
gtcactttagtccatagatccacatcatacatccttgattgtcaaaacaattgtcagctcatcttttaatggtcaattttaacgtcaaggacttaattgg |
25468590 |
T |
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| Q |
221 |
ttaacataggtatacatccagggactattttacattttatcccgagtagggaccattttaacaacaaaattcataatcagaaactaaaatggctgtatcc |
320 |
Q |
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| T |
25468591 |
ttaacataggtatacattcagggactattttacattttatcccgagtagggaccattttgacagcacaatgcatagtcagagactaaaatggttgtattc |
25468690 |
T |
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| Q |
321 |
cttaataacaaatgaggtctatctaacaaatcagttatactatttttaaagggttgaatgca |
382 |
Q |
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| T |
25468691 |
cttaataacaaatgaggtctatctaacaaatcacttatactttttttaaagggttgaatgca |
25468752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 210 - 353
Target Start/End: Original strand, 25473667 - 25473811
Alignment:
| Q |
210 |
gacttaattggttaacataggtatacatccagggactattttacattttatcccgagt-agggaccattttaacaacaaaattcataatcagaaactaaa |
308 |
Q |
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| T |
25473667 |
gacttaattggctaacagaggtacacatctagggactattttacattttatcttgagtcagggaccattgtgacagcgatatgcatggtcagggaccaaa |
25473766 |
T |
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| Q |
309 |
atggctgtatcccttaataacaaatgaggtctatctaacaaatca |
353 |
Q |
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| T |
25473767 |
atggttgtatcccttaataacaaatgaggtctatttaacaaatca |
25473811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 25473422 - 25473346
Alignment:
| Q |
21 |
acacaatgacttttggaaccattaacagtagaattttacataaatcagtttaaaacaaaattgtactattttgcatt |
97 |
Q |
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| T |
25473422 |
acacaatgaatttaagaaccattagtagcagactttcacataaatcagtacaaaacacaattgtactattttgcatt |
25473346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 374 - 409
Target Start/End: Original strand, 25468915 - 25468950
Alignment:
| Q |
374 |
ttgaatgcataactagctaacaagccttgcaaagaa |
409 |
Q |
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| T |
25468915 |
ttgaatgcagaactagctaacaagccttgcaaagaa |
25468950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 7626309 - 7626381
Alignment:
| Q |
195 |
aattttaacgtcaaggacttaattggttaacataggtatacatccagggactattttacattttatcccgagt |
267 |
Q |
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| T |
7626309 |
aatttaaacgtcaaggattaaattggttaacagaagtatacatccaaaaactattttacattttatcctgagt |
7626381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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