View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7472_low_5 (Length: 408)

Name: NF7472_low_5
Description: NF7472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7472_low_5
NF7472_low_5
[»] chr1 (12 HSPs)
chr1 (182-326)||(30529567-30529711)
chr1 (3-84)||(30529393-30529474)
chr1 (4-97)||(46729212-46729305)
chr1 (1-74)||(14758596-14758669)
chr1 (3-79)||(35508429-35508506)
chr1 (1-73)||(44920255-44920327)
chr1 (3-74)||(36564489-36564560)
chr1 (1-61)||(41649923-41649983)
chr1 (1-63)||(13792004-13792066)
chr1 (9-74)||(19547045-19547110)
chr1 (1-73)||(51681677-51681747)
chr1 (11-55)||(26533731-26533775)
[»] chr8 (8 HSPs)
chr8 (1-97)||(14237165-14237261)
chr8 (1-73)||(20142436-20142508)
chr8 (3-73)||(33285922-33285992)
chr8 (1-74)||(43238137-43238210)
chr8 (1-74)||(14855580-14855653)
chr8 (2-72)||(40464406-40464476)
chr8 (1-74)||(6904205-6904278)
chr8 (21-73)||(10565402-10565454)
[»] chr2 (5 HSPs)
chr2 (2-85)||(32438067-32438150)
chr2 (1-74)||(33962939-33963012)
chr2 (8-66)||(37597532-37597590)
chr2 (4-75)||(7933334-7933405)
chr2 (1-71)||(18734389-18734459)
[»] chr7 (6 HSPs)
chr7 (1-97)||(26238-26334)
chr7 (1-73)||(44319852-44319924)
chr7 (11-74)||(6771884-6771947)
chr7 (34-74)||(31902745-31902785)
chr7 (14-64)||(6775281-6775331)
chr7 (11-59)||(41898301-41898349)
[»] chr5 (6 HSPs)
chr5 (1-74)||(248457-248530)
chr5 (1-95)||(20125629-20125723)
chr5 (1-74)||(42877281-42877354)
chr5 (1-74)||(16980775-16980848)
chr5 (44-98)||(29558281-29558335)
chr5 (10-98)||(40944239-40944327)
[»] chr4 (10 HSPs)
chr4 (1-80)||(38380495-38380574)
chr4 (3-74)||(38949055-38949126)
chr4 (5-66)||(34469571-34469632)
chr4 (1-70)||(32893048-32893117)
chr4 (13-73)||(7388824-7388884)
chr4 (1-73)||(49011880-49011952)
chr4 (1-74)||(55855185-55855255)
chr4 (1-41)||(31655540-31655580)
chr4 (1-50)||(23133068-23133117)
chr4 (3-66)||(39804890-39804954)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-98)||(122437-122534)
[»] chr3 (8 HSPs)
chr3 (1-73)||(3973850-3973922)
chr3 (1-73)||(3995955-3996027)
chr3 (1-98)||(49682204-49682301)
chr3 (1-74)||(21813152-21813225)
chr3 (1-73)||(4009483-4009555)
chr3 (4-67)||(32606385-32606448)
chr3 (3-74)||(39145007-39145077)
chr3 (10-74)||(29212746-29212810)
[»] chr6 (1 HSPs)
chr6 (11-74)||(29988325-29988388)
[»] scaffold0633 (1 HSPs)
scaffold0633 (1-61)||(5013-5073)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 182 - 326
Target Start/End: Original strand, 30529567 - 30529711
Alignment:
Q  182 agccaattctattatagaaattagcaaaagtttgaagnnnnnnnn-taggattgtgatagatttaagaattttaggtccgatgaagttaattttggcttt 280  Q
    ||||||||||||||| |||||||||||||||||||||         ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  30529567 agccaattctattattgaaattagcaaaagtttgaagaaaaaaaaataggattgtgacagatttaagaactttaggtccgatgaagttaattttggcttt 30529666  T
Q  281 ctaaaagaattttgggnnnnnnntcaagaatgaggttgttatattt 326  Q
    ||||||||||||||||       |||||||||||||||||||||||    
T  30529667 ctaaaagaattttggg-aagaaatcaagaatgaggttgttatattt 30529711  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 30529393 - 30529474
Alignment:
Q  3 tttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaagtatgccttaa 84  Q
    ||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |||||    
T  30529393 tttaacacttcaatttctgatgcattaaatgcacaattttccataaaaatttactatttaaagtccttaaagaatgtcttaa 30529474  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 46729212 - 46729305
Alignment:
Q  4 ttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaagtatgccttaaggacattcgttaa 97  Q
    |||||||||||| |||||||| ||| |||||||||||| ||||||||||||| ||||||||||||||||||  |||||| ||| || |||||||    
T  46729212 ttaacacttcaaattccgatgcattgaatgcacaattttccataaaaatttactatttaaagtccttaaagagtgcctttagggcactcgttaa 46729305  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14758596 - 14758669
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    ||||||||| |||||||| ||||| ||| ||||||||||||  |||||||||||| ||||||||||||||||||    
T  14758596 agtttaacatttcaattttcgatgcattgaatgcacaatttttcataaaaatttactatttaaagtccttaaag 14758669  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 35508429 - 35508506
Alignment:
Q  3 tttaacacttcaatttccgatgtatt-aaatgcacaatttcccataaaaatttattatttaaagtccttaaagtatgc 79  Q
    |||||||||||||||||| ||| ||| ||||| |||||||| |||||||||||||||||||||||| |||||| ||||    
T  35508429 tttaacacttcaatttccaatgcatttaaatgtacaatttctcataaaaatttattatttaaagtctttaaagaatgc 35508506  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 44920255 - 44920327
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 73  Q
    ||||||||||||||||||  |||| ||| |||||||||||| ||||||||||||| ||||| |||||||||||    
T  44920255 agtttaacacttcaatttatgatgcattgaatgcacaattttccataaaaatttactatttcaagtccttaaa 44920327  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 36564560 - 36564489
Alignment:
Q  3 tttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    |||||||||||||||||  | | ||| ||||||||||||  ||||||| |||| ||||||||||||||||||    
T  36564560 tttaacacttcaatttctaaagcattgaatgcacaatttttcataaaattttactatttaaagtccttaaag 36564489  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 41649923 - 41649983
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattattt 61  Q
    ||||||||| |||||||||| ||| ||| |||||| ||||| ||||||||||||| |||||    
T  41649923 agtttaacatttcaatttcccatgcattgaatgcataattttccataaaaatttactattt 41649983  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13792066 - 13792004
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaa 63  Q
    |||||||||||||||||   |||| ||| |||||||||||||  ||||||||||| |||||||    
T  13792066 agtttaacacttcaattattgatgcatttaatgcacaatttcttataaaaatttactatttaa 13792004  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 19547110 - 19547045
Alignment:
Q  9 acttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    ||||||||| |||||| ||| ||||||||| || | ||||||| ||| ||| ||||||||||||||    
T  19547110 acttcaattcccgatgcattgaatgcacaagtttctataaaaacttactatataaagtccttaaag 19547045  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 51681677 - 51681747
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 73  Q
    |||||||||||| |||||||| || ||| |||| ||||||| ||||  |||||||||||||| ||| ||||||    
T  51681677 agtttaacactttaatttccggtgcattgaatgtacaattttccat--aaatttattatttagagttcttaaa 51681747  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 26533775 - 26533731
Alignment:
Q  11 ttcaatttccgatgtattaaatgcacaatttcccataaaaattta 55  Q
    ||||||||||| ||| |||||||||||| || |||||||||||||    
T  26533775 ttcaatttccgctgttttaaatgcacaagtttccataaaaattta 26533731  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 14237165 - 14237261
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaagtatgccttaaggacattcgttaa 97  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||  ||||| || |||||||    
T  14237165 agtttaacacttcaatttccgatgcattaaatgcacaattttccataaaaatttactatttaaagtccttaaagaatgctctaagggcactcgttaa 14237261  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 20142508 - 20142436
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 73  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20142508 agtttaacactttaattttcgatgcattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 20142436  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 33285992 - 33285922
Alignment:
Q  3 tttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 73  Q
    ||||||| |||||||| ||||||||||||| ||||||||  |||||||||||| |||||||||||||||||    
T  33285992 tttaacatttcaattttcgatgtattaaatacacaatttttcataaaaatttactatttaaagtccttaaa 33285922  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 43238210 - 43238137
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    |||||||||||||||||| ||||| |||||||| | ||||| ||||||||||||| |||||||||| |||||||    
T  43238210 agtttaacacttcaattttcgatgcattaaatgtagaattttccataaaaatttactatttaaagttcttaaag 43238137  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 14855653 - 14855580
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    |||||||||||||||||| ||||| || ||||| ||| |||  |||||||||||||||||||||||| ||||||    
T  14855653 agtttaacacttcaatttacgatgcatcaaatggacactttttcataaaaatttattatttaaagtctttaaag 14855580  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 40464476 - 40464406
Alignment:
Q  2 gtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaa 72  Q
    |||||| | |||||||| |||||| || ||||||||| || ||||||||||||| |||| |||||||||||    
T  40464476 gtttaatatttcaattttcgatgttttgaatgcacaagttaccataaaaatttactattcaaagtccttaa 40464406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6904205 - 6904278
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    |||||||  ||||||||||||||| ||| || |||||| || ||||||||| ||| ||| ||||||| ||||||    
T  6904205 agtttaatgcttcaatttccgatgcattgaacgcacaagtttccataaaaaattactatctaaagtctttaaag 6904278  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 10565402 - 10565454
Alignment:
Q  21 gatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 73  Q
    |||||||| ||||||||| || ||||||||||||| ||| ||||||| |||||    
T  10565402 gatgtattgaatgcacaaatttccataaaaatttactatctaaagtctttaaa 10565454  T

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Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 32438150 - 32438067
Alignment:
Q  2 gtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaagtatgccttaag 85  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| |||| |||||    
T  32438150 gtttaacacttcaatttccgatgcattaaatgcacaattttccataaaaatttactatttaaagtccttaaagaatgcattaag 32438067  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 33963012 - 33962939
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    |||||||||||||||||| | ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  33963012 agtttaacacttcaattttcaatgcattgaatgcacaatttttcataaaaatttattatttaaagtccttaaag 33962939  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 37597532 - 37597590
Alignment:
Q  8 cacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagt 66  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||    
T  37597532 cacttcaatttccaatgcattaaatgcacaatttcccataaaattttattatttaaagt 37597590  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 7933334 - 7933405
Alignment:
Q  4 ttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaagt 75  Q
    ||||||||||||||||||||| ||| |||||| |||||  |||||||||||| |||||||||| ||||||||    
T  7933334 ttaacacttcaatttccgatgcattgaatgcataatttttcataaaaatttactatttaaagtacttaaagt 7933405  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 18734389 - 18734459
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtcctta 71  Q
    |||||||||||||||||||||||  ||| ||||||||||||  |||||||||||| ||||| |||||||||    
T  18734389 agtttaacacttcaatttccgatacattgaatgcacaatttttcataaaaatttactatttcaagtcctta 18734459  T

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Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 26238 - 26334
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaagtatgccttaaggacattcgttaa 97  Q
    |||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| ||| | |||||||| |||||||    
T  26238 agtttaacactttaattttcgatgcattaaatgtacaatttcccataaaaatttattatttaaagttcttaaagaatgtcctaaggacactcgttaa 26334  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 44319924 - 44319852
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 73  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44319924 agtttaacactttaattttcgatgcattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 44319852  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 6771884 - 6771947
Alignment:
Q  11 ttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    ||||||||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  6771884 ttcaatttccgatatattgaatgcacaattttccataaaaatttactatttaaagtccttaaag 6771947  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 31902785 - 31902745
Alignment:
Q  34 cacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  31902785 cacaattttccataaaaatttactatttaaagtccttaaag 31902745  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 6775281 - 6775331
Alignment:
Q  14 aatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaa 64  Q
    ||||||||||| ||| |||||||||||| ||||||| ||||| ||||||||    
T  6775281 aatttccgatgcattgaatgcacaattttccataaatatttactatttaaa 6775331  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 41898301 - 41898349
Alignment:
Q  11 ttcaatttccgatgtattaaatgcacaatttcccataaaaatttattat 59  Q
    |||||||||||||| |||||||| |||| || |||||| ||||||||||    
T  41898301 ttcaatttccgatgcattaaatgtacaagtttccataacaatttattat 41898349  T

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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 248530 - 248457
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||    
T  248530 agtttaacacttcaatttccgatgtattgaatgcacaattttccataaaaatttactatttcaagtccttaaag 248457  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 20125723 - 20125629
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaagtatgccttaaggacattcgtt 95  Q
    |||||||||||||||||| ||||| | ||||||||||||||  |||||||||||| |||||||||||||||||  || |||||||| || |||||    
T  20125723 agtttaacacttcaattttcgatgcactaaatgcacaatttttcataaaaatttactatttaaagtccttaaaaaattccttaaggtcactcgtt 20125629  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42877281 - 42877354
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    ||||||| | |||||||| | ||||||| ||| |||||||| ||||||||||||| ||||||||||| ||||||    
T  42877281 agtttaaaatttcaattttcaatgtattgaatacacaattttccataaaaatttactatttaaagtctttaaag 42877354  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 16980775 - 16980848
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    |||||||||||||||||||||||  ||| |||| | |||||  ||||||||| || ||||||||||| ||||||    
T  16980775 agtttaacacttcaatttccgatacattgaatgtataatttttcataaaaatgtactatttaaagtctttaaag 16980848  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 29558281 - 29558335
Alignment:
Q  44 cataaaaatttattatttaaagtccttaaagtatgccttaaggacattcgttaac 98  Q
    ||||||||||||||||| ||||||||||||| ||| ||| ||  |||||||||||    
T  29558281 cataaaaatttattattaaaagtccttaaagaatgtctttagagcattcgttaac 29558335  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 40944327 - 40944239
Alignment:
Q  10 cttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaagtatgccttaaggacattcgttaac 98  Q
    ||||||||| ||||| ||| |||| |||| || ||||||||||||| ||| ||||||  ||||||| || | |||| ||| ||||||||    
T  40944327 cttcaattttcgatgcattgaatgtacaaatttccataaaaatttactatctaaagtatttaaagtgtgtcataagaacactcgttaac 40944239  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 38380495 - 38380574
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaagtatgcc 80  Q
    |||||||||||||||||||||| | |||||||||| ||||| ||||||||||||| |||||||||||||||||| |||||    
T  38380495 agtttaacacttcaatttccgaagcattaaatgcataattttccataaaaatttactatttaaagtccttaaagaatgcc 38380574  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 38949126 - 38949055
Alignment:
Q  3 tttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    |||||||||||||||||||||| ||| ||||||||||||  |||||||||||| ||||| ||||||||||||    
T  38949126 tttaacacttcaatttccgatgcattgaatgcacaatttttcataaaaatttactatttcaagtccttaaag 38949055  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 34469632 - 34469571
Alignment:
Q  5 taacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagt 66  Q
    ||||| |||||||||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  34469632 taacatttcaatttccgatgcattaaatgcacaatttttcataaaaatttattatttaaagt 34469571  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 32893048 - 32893117
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtcctt 70  Q
    ||||||||| |||||||| ||||| ||| |||||||||||| | |||||| |||| ||||||||||||||    
T  32893048 agtttaacatttcaattttcgatgcattgaatgcacaattttctataaaagtttactatttaaagtcctt 32893117  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 7388824 - 7388884
Alignment:
Q  13 caatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 73  Q
    |||||||||||| ||||||||||||| || ||||||||||||| ||| |||||| ||||||    
T  7388824 caatttccgatgcattaaatgcacaagtttccataaaaatttactatctaaagttcttaaa 7388884  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 49011952 - 49011880
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 73  Q
    ||||||| |||||||||| ||||| ||||||||||||| ||  || ||||| ||| |||||||||||||||||    
T  49011952 agtttaatacttcaattttcgatgcattaaatgcacaagttttcacaaaaacttactatttaaagtccttaaa 49011880  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 55855185 - 55855255
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    |||||||||||||||||| |||   ||||||| ||| ||||  |||||||||||||||||||||||||||||||    
T  55855185 agtttaacacttcaattttcgac--attaaat-cacgatttttcataaaaatttattatttaaagtccttaaag 55855255  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31655540 - 31655580
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaattt 41  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  31655540 agtttaacacttcaatatccgatgtattgaatgcacaattt 31655580  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 23133117 - 23133068
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaa 50  Q
    |||||||||||||||||||||||| ||| ||| |||||||| | ||||||    
T  23133117 agtttaacacttcaatttccgatgcattgaatacacaattttctataaaa 23133068  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 39804954 - 39804890
Alignment:
Q  3 tttaacacttcaatttccgatgtattaaatgcacaatttcccat-aaaaatttattatttaaagt 66  Q
    ||||||||||||||||  |||  ||||||||||||||||  ||| ||||||||| ||||||||||    
T  39804954 tttaacacttcaatttttgatacattaaatgcacaatttttcataaaaaatttactatttaaagt 39804890  T

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Target: scaffold0027 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 122534 - 122437
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaagtatgccttaaggacattcgttaac 98  Q
    |||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||| || ||||| ||||||||| ||||| ||| | || ||||||||    
T  122534 agtttaacactttaatttccgatgcattaaatgcacaattttccataaaaaattactacttaaaatccttaaagaatgccctaaaggcactcgttaac 122437  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3973850 - 3973922
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 73  Q
    |||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||    
T  3973850 agttcaacgcttcaatttccgatgcattaaatgcacaattttccataaaaatttactatttcaagtccttaaa 3973922  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3996027 - 3995955
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 73  Q
    |||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||    
T  3996027 agttcaacgcttcaatttccgatgcattaaatgcacaattttccataaaaatttactatttcaagtccttaaa 3995955  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 49682204 - 49682301
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaagtatgccttaaggacattcgttaac 98  Q
    ||||||||| |||||||||||| | ||| |||||||||||| | ||||||||||| |||||||||||||||||  || |  | |||||||||||||||    
T  49682204 agtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaatactcttaggacattcgttaac 49682301  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 21813225 - 21813152
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    |||||||||||| || |||||||| ||| |||||| ||||| ||||||||||||| |||||||| |||||||||    
T  21813225 agtttaacactttaaattccgatgcattgaatgcataattttccataaaaatttactatttaaaatccttaaag 21813152  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 4009555 - 4009483
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 73  Q
    |||| ||| ||||||||||||||| |||||||||||||||| ||| ||||||||| ||||| | |||||||||    
T  4009555 agttcaacgcttcaatttccgatgcattaaatgcacaattttccacaaaaatttactatttcatgtccttaaa 4009483  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 32606448 - 32606385
Alignment:
Q  4 ttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtc 67  Q
    |||||| |||||||||||||| ||| |||||| |||||  ||||||||||||||||||||||||    
T  32606448 ttaacatttcaatttccgatgcattgaatgcataatttttcataaaaatttattatttaaagtc 32606385  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 39145007 - 39145077
Alignment:
Q  3 tttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    |||||||||||||||||||||| ||| |||||| ||||| | || |||||||||||||||||||| ||||||    
T  39145007 tttaacacttcaatttccgatgcattgaatgcataattttctat-aaaatttattatttaaagtctttaaag 39145077  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 29212746 - 29212810
Alignment:
Q  10 cttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    |||||||||  |||||||| ||||||||| || | ||||||||||| ||| ||||||| ||||||    
T  29212746 cttcaatttatgatgtattgaatgcacaagtttctataaaaatttaatatctaaagtctttaaag 29212810  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 29988388 - 29988325
Alignment:
Q  11 ttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 74  Q
    ||||||||  |||||||| ||||  |||||| ||||||||||||| ||||||||||||||||||    
T  29988388 ttcaatttttgatgtattgaatgttcaattttccataaaaatttactatttaaagtccttaaag 29988325  T

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Target: scaffold0633 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5073 - 5013
Alignment:
Q  1 agtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattattt 61  Q
    ||||||||| |||||||||| ||| ||| |||||| ||||| ||||||||||||| |||||    
T  5073 agtttaacatttcaatttcccatgcattgaatgcataattttccataaaaatttactattt 5013  T

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