View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7472_low_6 (Length: 406)
Name: NF7472_low_6
Description: NF7472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7472_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 51 - 388
Target Start/End: Complemental strand, 24180343 - 24180003
Alignment:
| Q |
51 |
atgattaatttatatttccttcgtcatggctccatattatcatctccaactgttcttgtaatcaaattcttcttgatttgaatgttagaggattcat--- |
147 |
Q |
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| T |
24180343 |
atgattaatttatatttccttcgtcatggctccatattatcatctccaactgttcttgtaatcaaattcttcttgatttgaatgttagaggattcatatt |
24180244 |
T |
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| Q |
148 |
cccaaccaacctcatccaaaaatcttctagccaaaatcgtcatcatctacctctaccacacaaccaagttattaactattgtgcacaagttgggtagtag |
247 |
Q |
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| T |
24180243 |
cccaaccaacctcgtccaaaaatcttctagccaaaatcgtcatcatctacctctaccccacaaccaagttattaactattgtgcacaagttgggtagtag |
24180144 |
T |
|
| Q |
248 |
caacacctattttaaatttctaacacgtattccaattcagaagcaaattactcatcctttggcatatgaaattatgcaattatattcaagacaatatata |
347 |
Q |
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| T |
24180143 |
caacacctattttaaatttctaacacgtattccaattcataagcaaattaatcatcctttggcatatcaaattatgcaattaaattcaagacaatgtata |
24180044 |
T |
|
| Q |
348 |
attccaaagtttaccctaacaacatactcataggtacgaag |
388 |
Q |
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| T |
24180043 |
attccaaagtttaccctaacaacatactcataggtacgaag |
24180003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 24190196 - 24190082
Alignment:
| Q |
83 |
catattatcatctccaactgttcttgtaatcaaattcttcttgatttgaatgttagaggattca---tcccaacc-----aacctcatccaaaaatcttc |
174 |
Q |
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| T |
24190196 |
catactatcatctccaactgttcttgtaatcaaattcttcttgatttgaatgttagaggattcaccttcccaaccaacctaacctcgtccaaaagtcttc |
24190097 |
T |
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| Q |
175 |
tagccaaaatcgtca |
189 |
Q |
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| T |
24190096 |
tagccaaaatggtca |
24190082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 252
Target Start/End: Complemental strand, 24120071 - 24119965
Alignment:
| Q |
147 |
tcccaaccaacctcatccaaaaatcttctagccaaaatcgtcatcatctacctctaccacacaaccaagttattaacta-ttgtgcacaagttgggtagt |
245 |
Q |
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||||||||||||| | |||||||||| | ||||||| | ||||| |||||||| |||| |||||||| ||| |||| |||||||||||| ||||||| |
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| T |
24120071 |
tcccaaccaaccttgttcaaaaatctttaaaccaaaattggcatcacctacctctgacacaaaaccaagtaattgactatttgtgcacaagtggggtagt |
24119972 |
T |
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| Q |
246 |
agcaaca |
252 |
Q |
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| T |
24119971 |
aacaaca |
24119965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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