View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7472_low_7 (Length: 399)

Name: NF7472_low_7
Description: NF7472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7472_low_7
NF7472_low_7
[»] chr7 (5 HSPs)
chr7 (18-390)||(33601614-33601986)
chr7 (18-322)||(33601060-33601369)
chr7 (183-256)||(7244665-7244739)
chr7 (150-205)||(991700-991756)
chr7 (183-219)||(2176872-2176908)
[»] chr4 (4 HSPs)
chr4 (169-265)||(30668012-30668099)
chr4 (60-115)||(30668248-30668303)
chr4 (201-250)||(18011874-18011924)
chr4 (200-256)||(55547055-55547112)
[»] chr8 (1 HSPs)
chr8 (183-256)||(20672735-20672809)
[»] chr3 (1 HSPs)
chr3 (188-256)||(46407905-46407974)
[»] chr6 (2 HSPs)
chr6 (152-211)||(9027508-9027568)
chr6 (183-219)||(31672538-31672575)
[»] chr1 (1 HSPs)
chr1 (205-256)||(11893604-11893655)
[»] chr5 (1 HSPs)
chr5 (189-256)||(12521518-12521587)
[»] chr2 (4 HSPs)
chr2 (201-250)||(3067396-3067446)
chr2 (173-252)||(3227698-3227778)
chr2 (233-265)||(7103484-7103516)
chr2 (201-256)||(42817387-42817443)


Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 33601986 - 33601614
Alignment:
Q  18 acttatgccagtagataagctcaatctaatccaaacaggctttagtttctttaagcattgtaattgtacctttggattaaaattctaattgcatagccat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33601986 acttatgccagtagataagctcaatctaatccaaacaggctttagtttctttaagcattgtaattgtacctttggattaaaattctaattgcatagccat 33601887  T
Q  118 acatagattaattaaatgcttagtagcttacaacataagtgcttatcatgagttatttctacactaaaaaataaaataaagtcaaactgttttataagct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33601886 acatagattaattaaatgcttagtagcttacaacataagtgcttatcatgagttatttctacactaaaaaataaaataaagtcaaactgttttataagct 33601787  T
Q  218 attgtgaagactttatgaaaataagctaaaaacaacttagggatatgttgcaagttgtttcatgtcagaatttatatctataaatttttccagagcttca 317  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33601786 attgtgaagactttatgaaaataagctaaaaacaacttaaggatatgttgcaagttgtttcatgtcagaatttatatctataaatttttccagagcttca 33601687  T
Q  318 atattgtttgatgtttattataagtgtcaatgtttcttctctggactatgagttgaatatggtggatattctt 390  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  33601686 atattgtttgatgtttattataagtgtcaatgtttcttctcaggactatgagttgaatatggtggatactctt 33601614  T

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Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 33601369 - 33601060
Alignment:
Q  18 acttatgccagtagataagctcaa----tctaatccaaacaggctttagtttctttaagcattgtaattgtacctttggattaaaattctaattgcatag 113  Q
    |||||||||| |||||||||||||    || | ||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  33601369 acttatgccaatagataagctcaaataatcaattccaaaccggctttagtttctttaagcatagtaattgtacctttggattgaaattctaattgaatag 33601270  T
Q  114 ccatacatagattaattaaatgcttagtagcttacaacataagtgcttatcatgagttatttctacactaaaaaataaaataaagtcaaactgtttt-at 212  Q
    ||| ||||||||||||||||  ||  ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33601269 ccaaacatagattaattaaacactcggtagcttgcagcataagtgcttatcatgagttatttctacactaaaaaataaaataaagtcaaactgttttcat 33601170  T
Q  213 aagctattgtgaagactttatgaaaataagctaaaaacaacttagggatatgttgcaagttgtttcatgtcagaatttatatctataaatttttccagag 312  Q
    |||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33601169 aagctattgcaaagagtttatgaaaataagctaaaaacaacttagggatatgttgcaagttgtttcatgtcagaatttatatctataaatttttccaaag 33601070  T
Q  313 cttcaatatt 322  Q
    ||| ||||||    
T  33601069 ctttaatatt 33601060  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 7244665 - 7244739
Alignment:
Q  183 aaaaaataaaataaagtcaaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaactta 256  Q
    |||| |||||| |||||||||||||||| |||||||||  || |||  ||||||||||||||| |||||||||||    
T  7244665 aaaagataaaagaaagtcaaactgttttcataagctatattggagagcttatgaaaataagctgaaaacaactta 7244739  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 991700 - 991756
Alignment:
Q  150 acataagtgcttat-catgagttatttctacactaaaaaataaaataaagtcaaact 205  Q
    |||||||||||||| ||| ||||||||||  ||||||| ||||||||||| ||||||    
T  991700 acataagtgcttatgcataagttatttctctactaaaatataaaataaagacaaact 991756  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 2176872 - 2176908
Alignment:
Q  183 aaaaaataaaataaagtcaaactgttttataagctat 219  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  2176872 aaaagataaaataaagtcaaactgctttataagctat 2176908  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 265
Target Start/End: Complemental strand, 30668099 - 30668012
Alignment:
Q  169 gttatttctacactaaaaaataaaataaagtcaaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaacttagggatatgt 265  Q
    ||||||||||||| |||||||||||||||| |||||||| || |||||||| |          |||||||||||||||||||||||||||||||||||    
T  30668099 gttatttctacaccaaaaaataaaataaagccaaactgtcttcataagctact----------tatgaaaataagctaaaaacaacttagggatatgt 30668012  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 30668303 - 30668248
Alignment:
Q  60 tagtttctttaagcattgtaattgtacctttggattaaaattctaattgcatagcc 115  Q
    ||||||||||||   | ||||||||||||||||||| ||||| |||||||||||||    
T  30668303 tagtttctttaactgtagtaattgtacctttggattgaaattttaattgcatagcc 30668248  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 18011874 - 18011924
Alignment:
Q  201 aaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaac 250  Q
    |||||||||| |||||||||  |||||| ||||||||||||||||||||||    
T  18011874 aaactgttttcataagctatcttgaagagtttatgaaaataagctaaaaac 18011924  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 55547112 - 55547055
Alignment:
Q  200 caaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaactta 256  Q
    ||||||||||| |||||||||  |||| | |||||| |||||||||||||||||||||    
T  55547112 caaactgttttcataagctatgctgaaaagtttatggaaataagctaaaaacaactta 55547055  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 20672735 - 20672809
Alignment:
Q  183 aaaaaataaaataaagtcaaactg-ttttataagctattgtgaagactttatgaaaataagctaaaaacaactta 256  Q
    |||| ||||||||||||||||||| |||||||||||||  || |||  ||||||||||||||| |||||| ||||    
T  20672735 aaaagataaaataaagtcaaactgtttttataagctatcctggagagcttatgaaaataagctgaaaacagctta 20672809  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 46407974 - 46407905
Alignment:
Q  188 ataaaataaagtcaaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaactta 256  Q
    ||||| |||||| |||||||||| |||||||||||||| ||  || ||||||||||||| ||||||||||    
T  46407974 ataaagtaaagttaaactgttttcataagctattgtgatgagcttgtgaaaataagctagaaacaactta 46407905  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 9027508 - 9027568
Alignment:
Q  152 ataagtgcttatc-atgagttatttctacactaaaaaataaaataaagtcaaactgtttta 211  Q
    ||||||||||||| || || |||||||||| || || ||||||||||||||||||||||||    
T  9027508 ataagtgcttatctataagctatttctacaatagaagataaaataaagtcaaactgtttta 9027568  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 31672575 - 31672538
Alignment:
Q  183 aaaaaataaaataaagtcaaactgtttt-ataagctat 219  Q
    |||||||||||||||||||||||||||| |||||||||    
T  31672575 aaaaaataaaataaagtcaaactgttttcataagctat 31672538  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 11893655 - 11893604
Alignment:
Q  205 tgttttataagctattgtgaagactttatgaaaataagctaaaaacaactta 256  Q
    ||||| |||||||||| |||||| |||||| ||||||||| |||||||||||    
T  11893655 tgtttcataagctattttgaagagtttatggaaataagctgaaaacaactta 11893604  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 12521518 - 12521587
Alignment:
Q  189 taaaataaagtcaaactgtttt--ataagctattgtgaagactttatgaaaataagctaaaaacaactta 256  Q
    ||||||| ||||||||||||||  |||||||||| ||||||  ||||| ||||||||| |||||| ||||    
T  12521518 taaaatagagtcaaactgttttgtataagctattttgaagagcttatggaaataagctgaaaacagctta 12521587  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 3067446 - 3067396
Alignment:
Q  201 aaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaac 250  Q
    |||||||||| |||||||||  |||||| ||||||||||||||||||||||    
T  3067446 aaactgttttcataagctatcttgaagagtttatgaaaataagctaaaaac 3067396  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 3227778 - 3227698
Alignment:
Q  173 tttctacactaaaaaataaaataaagtcaaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaa 252  Q
    |||||| | |||||||||||| ||||| ||| |||||| |||||||||| || |||  || |||||||||||| |||||||    
T  3227778 tttctataataaaaaataaaacaaagttaaattgttttcataagctattttggagagattttgaaaataagctgaaaacaa 3227698  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 7103516 - 7103484
Alignment:
Q  233 tgaaaataagctaaaaacaacttagggatatgt 265  Q
    |||||||||||||||||||||||| ||||||||    
T  7103516 tgaaaataagctaaaaacaacttatggatatgt 7103484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 42817443 - 42817387
Alignment:
Q  201 aaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaactta 256  Q
    |||||||||| |||||||||| ||||||  ||||| || ||||||||||||||||||    
T  42817443 aaactgttttcataagctattctgaagagcttatggaagtaagctaaaaacaactta 42817387  T

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