View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7472_low_8 (Length: 382)
Name: NF7472_low_8
Description: NF7472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7472_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 6317975 - 6317608
Alignment:
| Q |
1 |
cctccataactttgtccactcccctggttttctcaagtttacataaatcatatgaccatatttcactgatcaagtttcctcttggaacaacaacaccaaa |
100 |
Q |
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| T |
6317975 |
cctccataactttgtccactcccctggttttctcaagtttacataaatcatatgaccatatttcactgatcaagtttcctcttggaacaacaacaccaaa |
6317876 |
T |
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| Q |
101 |
accaga-tttagcttcactcattaatcaactcagttcttcatgatatcaaattggaagtttcctccaagaattatttattaaagtttgttttttaggaga |
199 |
Q |
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| T |
6317875 |
accagaatttagcttcactcattaatcaactcagttcttcatgatatcaaattggaagtttcctcgaagaattatttattaaagtttgttttttaggaga |
6317776 |
T |
|
| Q |
200 |
tgttttcataagttctcctagagagtctcacaaaacaaggccaagagttgaaagggtttggtttgagataaaggctagagttgaagaaaacaggctcaag |
299 |
Q |
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| T |
6317775 |
tgttttcataagttctcctagagagtctcacaaaacaaggccaagagttgaaagggtttggtttgagataaaggctagaattgaagaaaacaggctcaag |
6317676 |
T |
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| Q |
300 |
cctcttttgatcaagaaagttaaaccttttattgaatctgatttagtttcctgggctaatttgatgtc |
367 |
Q |
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| T |
6317675 |
cctcttttgatcaagaaagttaaaccttttattgaatctgatttagtttcctgggctaatttgatgtc |
6317608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 233 - 367
Target Start/End: Complemental strand, 6297997 - 6297863
Alignment:
| Q |
233 |
aacaaggccaagagttgaaagggtttggtttgagataaaggctagagttgaagaaaacaggctcaagcctcttttgatcaagaaagttaaaccttttatt |
332 |
Q |
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| T |
6297997 |
aacaaggccaagtgttgaaagggtctggtttgaggtaatggcccgagttgaggacagcagactcaagcctctttcgatcaagaaagttaaaccttttatt |
6297898 |
T |
|
| Q |
333 |
gaatctgatttagtttcctgggctaatttgatgtc |
367 |
Q |
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| T |
6297897 |
gaatctgattcagtttcctgggctaatttgatgtc |
6297863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 6299993 - 6299943
Alignment:
| Q |
87 |
acaacaacaccaaaaccagatttagcttcactcattaatcaactcagttct |
137 |
Q |
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| T |
6299993 |
acaacaacaccaaaaccagatttagcttctcttgttgatcaactcagttct |
6299943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 33186384 - 33186418
Alignment:
| Q |
201 |
gttttcataagttctcctagagagtctcacaaaac |
235 |
Q |
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| T |
33186384 |
gttttcataagttctcctagacagtctcacaaaac |
33186418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 34034175 - 34034210
Alignment:
| Q |
200 |
tgttttcataagttctcctagagagtctcacaaaac |
235 |
Q |
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| T |
34034175 |
tgttttcataagttctcctaaagagtctcacaaaac |
34034210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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