View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7473_low_1 (Length: 493)
Name: NF7473_low_1
Description: NF7473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7473_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 8188293 - 8187863
Alignment:
| Q |
1 |
catcatcggtctcttgaagaaaggtctcaagctcatcaagactgaaaccttcaagcgaataacgagctctagtacgcatacaaatagcatcctcagtatc |
100 |
Q |
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| T |
8188293 |
catcatcagtctcttgaagaaaggtctcaagctcatcaagactgaaaccttcaagcgaataacgagctctagtacgcatacaaatagcatcctcagtatc |
8188194 |
T |
|
| Q |
101 |
tatgtctatcactgggcttcggggtttcgttgtgttgcttatgtcttctatcctaaaaccatcactagtaccactaatcaagtcattcttcttctcctta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8188193 |
tatgtctatcactgggcttcggggtttcgttgtgttgcttatgtcttctatcctaaaaccatcactagtaccactaatcaagtcattcttcttctcctta |
8188094 |
T |
|
| Q |
201 |
tcaatctccaattgagatatcatacctgccgcttctaaaacaatttcctcctcgccatgttcagaatctactgcactacagatttgctcattatccgtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8188093 |
tcaatctccaattgagatatcatacctgccgcttctaaaacaatttcctcctcgccatgttcagaatctactgcactacagatttgctcattatccgtta |
8187994 |
T |
|
| Q |
301 |
tcttttccaaatctatatccatagatggcccactatctacaacattacgatccaatccatcaccttcagaactcaaacttgatgaagcatccgaaagtgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8187993 |
tcttttccaaatctatatccatagatggcccactatctacaacattacgatccaatccatcaccttcagaactcaaacttgatgaagcatctgaaagtgt |
8187894 |
T |
|
| Q |
401 |
ttcctttagaaacaaaggattaaagtctgca |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
8187893 |
ttcctttagaaacaaaggattaaagtctgca |
8187863 |
T |
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