View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7473_low_2 (Length: 350)
Name: NF7473_low_2
Description: NF7473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7473_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 49133317 - 49132979
Alignment:
| Q |
1 |
tgaaaattgttcaccaactttggatcaagtaaagtaatggatagacacacagctaaatctggtgaagaacaatgataaaatgttacagaacatgttctat |
100 |
Q |
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| T |
49133317 |
tgaaaattgttcaccaactttggatcaagtaaagtaatggatagacacacagctaaatctggtgaagaacaatgataaaatgttacagaacatgttctat |
49133218 |
T |
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| Q |
101 |
ttcttcgacaggataacatattcttataaatcaagcaattcgaccatcaacattctcaggcatgcctcttccttcatgatgaccaccatcnnnnnnnnnn |
200 |
Q |
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| T |
49133217 |
ttcttcgacaggataacatattcttataaatcaagcaattcgaccatcaatattctcaggcatgccttttccttcatgatgaccaccatc-------ttt |
49133125 |
T |
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| Q |
201 |
nnnnnnnnnaagttccaatcttagctaattcctcctcatgctttccattggcttttggtgagaggtggagtgagtgatttctctcgtcatccaagtggtg |
300 |
Q |
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| T |
49133124 |
tttttttttaagttccaatcttagctaattcctcctcatgctttccattggcttttggtgagaggtggagtgagtgatttctctcgtcatccaagtggtg |
49133025 |
T |
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| Q |
301 |
ttcatgtttgttacaatgacggcggcggtgatggtgatgatgtcca |
346 |
Q |
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| T |
49133024 |
ttcatgtttgttacaatgacggcggcggtgatggtggtgatgtcca |
49132979 |
T |
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