View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7473_low_5 (Length: 289)
Name: NF7473_low_5
Description: NF7473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7473_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 19795142 - 19794879
Alignment:
| Q |
18 |
cgattatcaagctattactaggaagtatagagaaaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgaaggccaccccg |
117 |
Q |
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| T |
19795142 |
cgattatcaagctattactaggaagtatagagaaaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgaaggccaccccg |
19795043 |
T |
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| Q |
118 |
gtgccatccactcagaaaggagtggcactggtaagtgggttttcgaagaatctgctgacattgttcttggataacgaaggtgatataagccctgtagaag |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
19795042 |
gtgccatccactcagaaaggagtggcgctggtaagtgggttttcgaagaatctgctgacattgttcttcgataacgatggtgatataagccctgtagaag |
19794943 |
T |
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| Q |
218 |
ccatggaagctgccattgctggccccgagtatcagaaactagttgtgctggattgatattcttc |
281 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19794942 |
ccatggaagctgccatcgctggccccgagtatcagaaactagttgtgctggattgattttcttc |
19794879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 19786445 - 19786707
Alignment:
| Q |
18 |
cgattatcaagctattactaggaagtatagagaaaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgaaggccaccccg |
117 |
Q |
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| T |
19786445 |
cgattaccaagcaatcactaggaagtatagcgagaaagggtatggttctgttgtgcctcagatagttttttggaatctgagagactcgagggccacccca |
19786544 |
T |
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| Q |
118 |
gtgccatccactcagaaaggagtggcactggtaagtgggttttcgaagaatctgctgacattgttcttggataacgaaggtgatataagccctgtagaag |
217 |
Q |
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| T |
19786545 |
gtgcgtgctactcagaaaggagttgcgctggtgagtggtttctctaagaatctgctgacactgttcttagataatgaaggtgaaataagccctgaagaag |
19786644 |
T |
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| Q |
218 |
ccatggaagctgccattgctggccccgagtatcagaaactagttgtgctggattgatattctt |
280 |
Q |
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| T |
19786645 |
ccatggaagctgccattgctggccctgagtatcagaaactagttgtgctggattgattttctt |
19786707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 25 - 274
Target Start/End: Complemental strand, 15834442 - 15834193
Alignment:
| Q |
25 |
caagctattactaggaagtatagagaaaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgaaggccaccccggtgccat |
124 |
Q |
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|||| ||| |||||||| | |||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
15834442 |
caagttatcactaggaaatttagagagaaagggtatggttctgttttgcctcagatagttttttggaatctgagagattcgatcgccaccccggtgccat |
15834343 |
T |
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| Q |
125 |
ccactcagaaaggagtggcactggtaagtgggttttcgaagaatctgctgacattgttcttggataacgaaggtgatataagccctgtagaagccatgga |
224 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| | |||||||||||| |
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| T |
15834342 |
ccactcagaaaggagtggcgctgttaagtgggttttcgaagaatctactgacattgttcttggataatgaaggtgatctaagccccgaagaagccatgga |
15834243 |
T |
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| Q |
225 |
agctgccattgctggccccgagtatcagaaactagttgtgctggattgat |
274 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15834242 |
agctaccatcgctggccccgagtatcagaaactagttgtgctggattgat |
15834193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 47712040 - 47711851
Alignment:
| Q |
19 |
gattatcaagctattactaggaagtatagagaaaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgaaggccaccccgg |
118 |
Q |
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||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |
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| T |
47712040 |
gattaccaagcaatcactaggaagtatagagagaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgatggcgaccccag |
47711941 |
T |
|
| Q |
119 |
tgccatccactcagaaaggagtggcactggtaagtgggttttcgaagaatctgctgacattgttcttggataacgaaggtgatataagcc |
208 |
Q |
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| T |
47711940 |
tgtcagccactcagaaaggagtggcgctgttaagtggattttctaagaatctgctgaaattgttcttggataatgaaggtgatataagcc |
47711851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 196 - 274
Target Start/End: Complemental strand, 47711830 - 47711752
Alignment:
| Q |
196 |
ggtgatataagccctgtagaagccatggaagctgccattgctggccccgagtatcagaaactagttgtgctggattgat |
274 |
Q |
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||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47711830 |
ggtgatataagccctgtaggagttatggaagctgcaattgctggccccgagtatcagaaactagttgtgctggattgat |
47711752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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