View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7473_low_6 (Length: 245)

Name: NF7473_low_6
Description: NF7473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7473_low_6
NF7473_low_6
[»] chr5 (4 HSPs)
chr5 (1-231)||(10298247-10298477)
chr5 (1-58)||(9747161-9747218)
chr5 (68-140)||(9747249-9747320)
chr5 (160-231)||(10290129-10290200)
[»] chr2 (3 HSPs)
chr2 (119-189)||(16021964-16022034)
chr2 (65-147)||(14117731-14117814)
chr2 (6-58)||(33599016-33599068)
[»] chr4 (2 HSPs)
chr4 (96-182)||(51978594-51978683)
chr4 (124-183)||(3929573-3929630)
[»] chr1 (3 HSPs)
chr1 (4-55)||(36033560-36033611)
chr1 (124-173)||(16119091-16119140)
chr1 (85-174)||(21623678-21623767)
[»] chr7 (2 HSPs)
chr7 (4-54)||(48522878-48522928)
chr7 (4-56)||(46392597-46392649)
[»] scaffold0187 (1 HSPs)
scaffold0187 (4-57)||(4567-4620)
[»] scaffold0062 (1 HSPs)
scaffold0062 (18-58)||(332-372)
[»] chr8 (1 HSPs)
chr8 (133-181)||(9706796-9706844)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 10298477 - 10298247
Alignment:
Q  1 tcatatttatttgttgtttttaaattttaatgcaacattaactattattttgtcaatattgcaaagagataagtagatagaacaagataataaaaagtta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10298477 tcatatttatttgttgtttttaaattttaatgcaacattaactattattttgtcaatattgcaaagggataagtagatagaacaagataataaaaagtta 10298378  T
Q  101 agggtataatagaaaaagaaatgatttcatcaaaagtaacgaaatttactagttttcttattatgtgtaaataatcttaaaacgacaataagaaggaacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  10298377 agggtataatagaaaaagaaatgatttcatcaaaagtaacgaaatttactagttttcttattatgtgtaaataatattaaaacaacaataagaaggaacg 10298278  T
Q  201 gacggaatatttttacctgttgactatgatg 231  Q
    |||||| ||||||||||||||||||||||||    
T  10298277 gacggagtatttttacctgttgactatgatg 10298247  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 9747161 - 9747218
Alignment:
Q  1 tcatatttatttgttgtttttaaattttaatgcaacattaactattattttgtcaata 58  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9747161 tcatacttatttgtcgtttttaaattttaatgcaacattaactattattttgtcaata 9747218  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 9747249 - 9747320
Alignment:
Q  68 gataagtagatagaacaagataataaaaagttaagggtataatagaaaaagaaatgatttcatcaaaagtaac 140  Q
    ||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  9747249 gataaatagatggaacaagataataaaaa-ttaagggtattatagaaaaagaaataatttcatcaaaagtaac 9747320  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 10290200 - 10290129
Alignment:
Q  160 attatgtgtaaataatcttaaaacgacaataagaaggaacggacggaatatttttacctgttgactatgatg 231  Q
    |||||||||||||||| ||||||||| ||||| |||||||| ||| | ||||||| ||||||||| ||||||    
T  10290200 attatgtgtaaataattttaaaacgaaaataaaaaggaacgaacgtactatttttgcctgttgaccatgatg 10290129  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 16021964 - 16022034
Alignment:
Q  119 aaatgatttcatcaaaagtaacgaaatttactagttttcttattatgtgtaaataatcttaaaacgacaat 189  Q
    |||| ||| ||| ||||||||| ||||||| | ||||||| | ||||||||||||||||||||||||||||    
T  16021964 aaataattccataaaaagtaacaaaatttattggttttctcagtatgtgtaaataatcttaaaacgacaat 16022034  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 14117731 - 14117814
Alignment:
Q  65 agagataagtagatagaacaagataataaaaagttaagggtataatag-aaaaagaaatgatttcatcaaaagtaacgaaattt 147  Q
    |||||||| |||||  || ||||||||||| | ||||| |||| |||| ||||||| || ||||||||||||||||| ||||||    
T  14117731 agagataaatagatgaaataagataataaatacttaagagtattataggaaaaagacataatttcatcaaaagtaacaaaattt 14117814  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 33599068 - 33599016
Alignment:
Q  6 tttatttgttgtttttaaattttaatgcaacattaactattattttgtcaata 58  Q
    ||||||| || |||| ||| |||||||||||||||||  ||||||||||||||    
T  33599068 tttatttattattttcaaagtttaatgcaacattaaccgttattttgtcaata 33599016  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 51978683 - 51978594
Alignment:
Q  96 agttaagggtataatagaaaaag---aaatgatttcatcaaaagtaacgaaatttactagttttcttattatgtgtaaataatcttaaaa 182  Q
    |||||||||||| |||||||||    |||| ||  ||||||||||||| ||||||| ||||||||| | ||||||| |||||||||||||    
T  51978683 agttaagggtattatagaaaaatgacaaataataccatcaaaagtaacaaaatttattagttttctaagtatgtgtcaataatcttaaaa 51978594  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 3929630 - 3929573
Alignment:
Q  124 atttcatcaaaagtaacgaaatttactagttttcttattatgtgtaaataatcttaaaac 183  Q
    |||||||||||| |||| ||||||| | |||||||||  |||||||||||| ||||||||    
T  3929630 atttcatcaaaaataacaaaatttattggttttctta--atgtgtaaataaacttaaaac 3929573  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 36033560 - 36033611
Alignment:
Q  4 tatttatttgttgtttttaaattttaatgcaacattaactattattttgtca 55  Q
    ||||||||| |||||||| || |||||| ||| |||||||||||||||||||    
T  36033560 tatttatttattgttttttaaatttaattcaatattaactattattttgtca 36033611  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 16119091 - 16119140
Alignment:
Q  124 atttcatcaaaagtaacgaaatttactagttttcttattatgtgtaaata 173  Q
    ||||||||||||||||| ||||||| |  ||||||| |||||||||||||    
T  16119091 atttcatcaaaagtaacaaaatttaatgtttttcttgttatgtgtaaata 16119140  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 21623678 - 21623767
Alignment:
Q  85 agataataaaaagttaagggtataatagaaaaagaaatgatttcatcaaaagtaacgaaatttactagttttcttattatgtgtaaataa 174  Q
    |||||||||| | |||||||||| | ||||||||| |   |||||||||||||||| |||||||   ||||||||  | |||||||||||    
T  21623678 agataataaatatttaagggtattaaagaaaaagacacactttcatcaaaagtaacaaaatttatcggttttcttggtttgtgtaaataa 21623767  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 48522878 - 48522928
Alignment:
Q  4 tatttatttgttgtttttaaattttaatgcaacattaactattattttgtc 54  Q
    ||||||||| |  |||||||| |||||||||||||||| ||||||||||||    
T  48522878 tatttatttatcatttttaaagtttaatgcaacattaattattattttgtc 48522928  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 46392649 - 46392597
Alignment:
Q  4 tatttatttgttgtttttaaattttaatgcaacattaactattattttgtcaa 56  Q
    ||||||||||| ||||| ||| || ||||||||||||||||  ||||||||||    
T  46392649 tatttatttgtcgttttcaaagttcaatgcaacattaactaggattttgtcaa 46392597  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 4620 - 4567
Alignment:
Q  4 tatttatttgttgtttttaaattttaatgcaacattaactattattttgtcaat 57  Q
    |||||| |||||||||||||| ||| ||| ||||||||||||||| ||| ||||    
T  4620 tatttaattgttgtttttaaagttttatgtaacattaactattatcttgacaat 4567  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 332 - 372
Alignment:
Q  18 ttttaaattttaatgcaacattaactattattttgtcaata 58  Q
    |||||||||||||||||||||||| |||| | |||||||||    
T  332 ttttaaattttaatgcaacattaattattgtcttgtcaata 372  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 9706796 - 9706844
Alignment:
Q  133 aaagtaacgaaatttactagttttcttattatgtgtaaataatcttaaa 181  Q
    |||||||||||||||| | ||||||||  ||||||||||||| ||||||    
T  9706796 aaagtaacgaaatttattggttttcttggtatgtgtaaataaccttaaa 9706844  T

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