View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7473_low_9 (Length: 216)
Name: NF7473_low_9
Description: NF7473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7473_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 21196848 - 21196692
Alignment:
| Q |
1 |
cgatatatactcttcatttcggtcacttatgtgttaagacctccaaggcttcgcttcgatatgcctgcatttccaaaaaatttcctcaggaggatgcctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21196848 |
cgatatatactcttcatttcggtcacttatgtgttaagacctccaaggcttcgcttcgatatgcctgcatttccacaaaatttcctcaggaggatgcctg |
21196749 |
T |
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| Q |
101 |
caaaatcagatggcatgttatgagttgatttgtcttcattttctgctactgtttggt |
157 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
21196748 |
caaaatcagatggcatgttatgagttaatttgtcttcattttttgctactgtttggt |
21196692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 27252692 - 27252536
Alignment:
| Q |
1 |
cgatatatactcttcatttcggtcacttatgtgttaagacctccaaggcttcgcttcgatatgcctgcatttccaaaaaatttcctcaggaggatgcctg |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27252692 |
cgatatatactcttcatttcagtcacttatgtgttaagacctccaaggcttcgcttcgatatgcctgcatttccacaaaatttcctcaggaggatgcctg |
27252593 |
T |
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| Q |
101 |
caaaatcagatggcatgttatgagttgatttgtcttcattttctgctactgtttggt |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27252592 |
caaaatcagatggcatgttatgagttgatttgtcttcattttctgctattgtttggt |
27252536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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