View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7474_low_1 (Length: 337)

Name: NF7474_low_1
Description: NF7474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7474_low_1
NF7474_low_1
[»] chr7 (1 HSPs)
chr7 (4-337)||(21434631-21434962)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 4 - 337
Target Start/End: Complemental strand, 21434962 - 21434631
Alignment:
Q  4 agagtaaatgcattatgatctagtagagtattttgtagttttatttctatgttttgaaaatcaaatataatcacttatacaatcatgcgaatttggtaat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21434962 agagtaaatgcattatgatctagtagagtattttgtagttttatttctatgttttgaaaatcaaatataatcacttatacaatcatgcgaatttggtaat 21434863  T
Q  104 tcagtattagaataagaccctcaagatatttgctagagatatggtctagataaagcttataaagattagacagttttttgttttatgggatatagatcca 203  Q
    | ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21434862 ttagtattagaataagaccctcaagatatttgctagagatatgg--tagataaagcttataaagattagacagttttttgttttatgggatataggtcca 21434765  T
Q  204 aaatgtaaaatgatattaaagtttaacttggatatattatttagctgcacatattataaaacttagtgaggaacccttaccnnnnnnnnnnaacaaattc 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||    
T  21434764 aaatgtaaaatgatattaaagtttaacttggatatattatttagctgcacatattataaaacttagtgaggaacccttaccttttttttttaacaaattc 21434665  T
Q  304 acattgcattaatttaacatccattaatttgaca 337  Q
    ||||||||||||||||||||||||||||||||||    
T  21434664 acattgcattaatttaacatccattaatttgaca 21434631  T

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