View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7474_low_2 (Length: 328)

Name: NF7474_low_2
Description: NF7474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7474_low_2
NF7474_low_2
[»] chr2 (6 HSPs)
chr2 (93-326)||(30270029-30270262)
chr2 (98-155)||(24890548-24890605)
chr2 (130-183)||(41770470-41770523)
chr2 (130-165)||(34238714-34238749)
chr2 (98-148)||(24889910-24889960)
chr2 (129-226)||(41768834-41768931)
[»] chr1 (8 HSPs)
chr1 (93-328)||(23732005-23732242)
chr1 (95-241)||(17172741-17172886)
chr1 (100-241)||(1631717-1631856)
chr1 (13-80)||(31908790-31908857)
chr1 (98-211)||(44769510-44769620)
chr1 (123-211)||(1632712-1632799)
chr1 (95-136)||(36390452-36390493)
chr1 (98-163)||(36681532-36681596)
[»] chr8 (4 HSPs)
chr8 (93-285)||(17873403-17873596)
chr8 (93-179)||(44473914-44474000)
chr8 (205-285)||(44474020-44474103)
chr8 (129-183)||(42294250-42294304)
[»] chr4 (7 HSPs)
chr4 (96-211)||(23638186-23638301)
chr4 (96-211)||(36001825-36001940)
chr4 (100-238)||(23637385-23637522)
chr4 (123-212)||(36001028-36001117)
chr4 (129-211)||(39831956-39832038)
chr4 (130-201)||(46144752-46144823)
chr4 (130-211)||(20422975-20423056)
[»] chr5 (5 HSPs)
chr5 (95-241)||(4908330-4908475)
chr5 (129-211)||(10470096-10470178)
chr5 (129-211)||(43511068-43511150)
chr5 (96-138)||(25593368-25593409)
chr5 (98-138)||(4084001-4084040)
[»] chr3 (3 HSPs)
chr3 (125-211)||(17805-17891)
chr3 (128-211)||(5578792-5578876)
chr3 (123-164)||(53833242-53833283)
[»] chr7 (1 HSPs)
chr7 (129-211)||(45432893-45432975)
[»] scaffold0086 (1 HSPs)
scaffold0086 (129-166)||(8415-8452)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 93 - 326
Target Start/End: Complemental strand, 30270262 - 30270029
Alignment:
Q  93 gcatgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30270262 gcatgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcaaattaaaagttccatatt 30270163  T
Q  193 taattaattacacatgatttattttcttcttttttcttgcgtctccttccttcatatttactagctacctcttccccttccccttcattcttctgatctt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30270162 taattaattacacatgatttattttcttcttttttcttgcgtctccttccttcatatttactagctacctcttccccttccccatcattcttctgatctt 30270063  T
Q  293 ctatatcgaaacaatatgcaaatcaacagaaaat 326  Q
    ||||||||||||| ||||||||||| ||||||||    
T  30270062 ctatatcgaaacagtatgcaaatcagcagaaaat 30270029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 24890605 - 24890548
Alignment:
Q  98 tatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccatta 155  Q
    |||||||||||||||||||||||| |||||||||||||||| | ||||||| ||||||    
T  24890605 tatcaagtgagaggagtgtcttattgtgagagatgagaggattgattaataaccatta 24890548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 41770523 - 41770470
Alignment:
Q  130 atgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaag 183  Q
    ||||||||||||||||||| |||| |||||||||||| ||| ||||||||||||    
T  41770523 atgagaggactcattaataaccatcagatcaaattgtatggatcagattaaaag 41770470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 34238749 - 34238714
Alignment:
Q  130 atgagaggactcattaatagccattagatcaaattg 165  Q
    ||||||||||||||||||||||||||||||||||||    
T  34238749 atgagaggactcattaatagccattagatcaaattg 34238714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 24889910 - 24889960
Alignment:
Q  98 tatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaata 148  Q
    |||||||||||||||||||| ||||||||||||||||| || | |||||||    
T  24889910 tatcaagtgagaggagtgtcgtatggtgagagatgagaagattgattaata 24889960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 41768834 - 41768931
Alignment:
Q  129 gatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgatttattttcttcttttt 226  Q
    |||||||| |||| |||||| ||||||||||||||||| ||| || ||||||||| | | |||  |||||||| ||||| |||  ||| |||||||||    
T  41768834 gatgagagaactcgttaataaccattagatcaaattgtatggatcggattaaaagcttcgtataaaattaattgcacattattattttccttcttttt 41768931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 93 - 328
Target Start/End: Original strand, 23732005 - 23732242
Alignment:
Q  93 gcatgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatag--ccattagatcaaattgtgtggctcagattaaaagttccata 190  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  23732005 gcatgtatcaagtgaggggagtgtcttatgatgagagatgggaggactcattaatagagccattagatcaaattgtgtggctcagattaaaagttccata 23732104  T
Q  191 tttaattaattacacatgatttattttcttcttttttcttgcgtctccttccttcatatttactagctacctcttccccttccccttcattcttctgatc 290  Q
    || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  23732105 ttcaattaattacaaatgatttattttcttcttttttcttgcgtctccttccttcatatttactagctatctcttccccttccccttaattcttctgatc 23732204  T
Q  291 ttctatatcgaaacaatatgcaaatcaacagaaaataa 328  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  23732205 ttctatatcgaaacagtatgcaaatcagcagaaaataa 23732242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 95 - 241
Target Start/End: Original strand, 17172741 - 17172886
Alignment:
Q  95 atgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatattta 194  Q
    |||||||| ||||||| ||| ||| || ||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| |  |    
T  17172741 atgtatcaggtgagagaagtatct-attgtgagaggtgagaggactcattaatagcctttagattaaattgtgtggctcagattaaaagctccatctaaa 17172839  T
Q  195 attaattacacatgatttattttcttcttttttcttgcgtctccttc 241  Q
    ||||||||||||||||||  || ||||||| || | |||||||||||    
T  17172840 attaattacacatgattttcttccttctttcttttcgcgtctccttc 17172886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 100 - 241
Target Start/End: Original strand, 1631717 - 1631856
Alignment:
Q  100 tcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaa 199  Q
    ||||||||||||||| ||| || ||||||||||||| |||||||||||| ||||||||| ||||| |||| ||||||||||||| ||| |||| ||||||    
T  1631717 tcaagtgagaggagtatct-attgtgagagatgagatgactcattaataaccattagattaaattatgtgactcagattaaaagctccttattaaattaa 1631815  T
Q  200 ttacacatgatttattttcttcttttttcttgcgtctccttc 241  Q
     ||||||| |||| ||| ||||||||||| | ||||||||||    
T  1631816 ctacacataatttttttccttcttttttcct-cgtctccttc 1631856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 31908857 - 31908790
Alignment:
Q  13 attctgttaacgcactagttttgtcgcagaattttactgtaacattattgagtttacaaaatcacgac 80  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31908857 attctgttaacacactagttttgtcgcagaattttactgtaacattattgagtttacaaaatcacgac 31908790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 44769620 - 44769510
Alignment:
Q  98 tatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaatt 197  Q
    ||||||||||||||||| ||| || ||||||  ||||||||| ||||||||||||||||||||||||||| || ||||||| |||| |||||||| ||||    
T  44769620 tatcaagtgagaggagtatct-attgtgaga--tgagaggacccattaatagccattagatcaaattgtgcgggtcagatttaaagctccatattaaatt 44769524  T
Q  198 aattacacatgatt 211  Q
    ||||||||||||||    
T  44769523 aattacacatgatt 44769510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 1632799 - 1632712
Alignment:
Q  123 gtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgatt 211  Q
    ||||||||| ||||||||||||||| ||||||| || ||||| ||||||||| |||||||| | |||||| |||||| |||||||||||    
T  1632799 gtgagagataagaggactcattaatggccattaaattaaattatgtggctcaaattaaaagcttcatattaaattaa-tacacatgatt 1632712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 36390452 - 36390493
Alignment:
Q  95 atgtatcaagtgagaggagtgtcttatggtgagagatgagag 136  Q
    |||||||||||||||||||||||||||   ||||||||||||    
T  36390452 atgtatcaagtgagaggagtgtcttattacgagagatgagag 36390493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 36681532 - 36681596
Alignment:
Q  98 tatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaat 163  Q
    ||||||||||||||||| | |||| |||||||||||||||| | ||||||| ||||| ||| ||||    
T  36681532 tatcaagtgagaggagt-tgttatagtgagagatgagaggagtaattaataaccattcgattaaat 36681596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 93 - 285
Target Start/End: Complemental strand, 17873596 - 17873403
Alignment:
Q  93 gcatgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatt 192  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||||||||||| |||||||    
T  17873596 gcatgtatcaaatgagaggagtatcttatggtgagagatgagaggactaatcaatagccattagatcaaattgtgtgggttagattaaaagtgccatatt 17873497  T
Q  193 taattaattacacatgatttattttcttcttttttcttgcgtctccttccttcata-tttactagctacctcttccccttccccttcattcttc 285  Q
     ||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| || ||||||    
T  17873496 aaattaatcacacatgatttattttcttgttttttctggcgtctccttccttcatattttactagctacctcttccccttccccatccttcttc 17873403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 44474000 - 44473914
Alignment:
Q  93 gcatgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagatta 179  Q
    |||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| | ||||||    
T  44474000 gcatgtatcaagtgagaggaatatcttatggtgagagatgagcggactcatcaatagccattggatcaaattgtgtgggttagatta 44473914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 44474020 - 44474103
Alignment:
Q  205 catgatttattttcttcttttttcttg-cgtctccttccttcatattt--actagctacctcttccccttccccttcattcttc 285  Q
    ||||||||||||| || |||||||||| ||||||||||||||||||||  |||||||||||||||||||||||| || ||||||    
T  44474020 catgatttatttttttgttttttcttggcgtctccttccttcatatttttactagctacctcttccccttccccatccttcttc 44474103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 42294304 - 42294250
Alignment:
Q  129 gatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaag 183  Q
    |||||||||| |||||||||||||||||||||||||| | |  ||||||||||||    
T  42294304 gatgagaggattcattaatagccattagatcaaattgagcgaatcagattaaaag 42294250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 23638301 - 23638186
Alignment:
Q  96 tgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaa 195  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |  ||    
T  23638301 tgtatcaagtgagaggagtatcttattgtgagaggtgagaggactcattaatagacattagattaaattgtgtggctcagattaaaagttccatctaaaa 23638202  T
Q  196 ttaattacacatgatt 211  Q
    ||||||||||| ||||    
T  23638201 ttaattacacaagatt 23638186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 36001940 - 36001825
Alignment:
Q  96 tgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaa 195  Q
    ||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |  ||    
T  36001940 tgtatcaagtgagagaagtatcttattgtgagaggtgagaggactcattaatagccattagattaaattatgtggctcagattaaaagttccatctaaaa 36001841  T
Q  196 ttaattacacatgatt 211  Q
    ||||||||||| ||||    
T  36001840 ttaattacacaagatt 36001825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 23637385 - 23637522
Alignment:
Q  100 tcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaa 199  Q
    |||| |||||||||| ||| || ||||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||| ||||| || ||||||    
T  23637385 tcaaatgagaggagtatct-attgtgagaggtgagaggactctttaatagccattaaattaaattgtgtggctcagattaaaagctccatcttaaattaa 23637483  T
Q  200 ttacacatgatttattttcttcttttttcttgcgtctcc 238  Q
    |||||||| ||||  || ||||||| || | ||||||||    
T  23637484 ttacacataattttcttccttctttcttttcgcgtctcc 23637522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 36001028 - 36001117
Alignment:
Q  123 gtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgattt 212  Q
    ||||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||| ||||| || |||||||||||||||||||    
T  36001028 gtgagaggtgagaggactctttaatagccattaaattaaattgtgtggctcagattaaaagctccattttaaattaattacacatgattt 36001117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 39832038 - 39831956
Alignment:
Q  129 gatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgatt 211  Q
    |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||  | |||||  |||||||| |||||||||    
T  39832038 gatgagaggactcattaataaccattagatcaaattgtatggatcagattaaaaacttcatataaaattaattgcacatgatt 39831956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 46144752 - 46144823
Alignment:
Q  130 atgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaatt 201  Q
    ||||||||||||||||||| | ||||||||||||||| ||| |||||||||||| | |||||  ||||||||    
T  46144752 atgagaggactcattaataactattagatcaaattgtatggatcagattaaaagcttcatataaaattaatt 46144823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 20422975 - 20423056
Alignment:
Q  130 atgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgatt 211  Q
    |||||||||||||||||||||||||| |||||||||   || |||||||||||| | |||||  |||| ||| |||||||||    
T  20422975 atgagaggactcattaatagccattaaatcaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgatt 20423056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 95 - 241
Target Start/End: Original strand, 4908330 - 4908475
Alignment:
Q  95 atgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatattta 194  Q
    |||||||| ||||||||||| ||| || ||||||| ||||||||||| ||||||||| |||||| |||||||||||||||||||||||| ||||| |  |    
T  4908330 atgtatcaggtgagaggagtatct-attgtgagaggtgagaggactcgttaatagcctttagattaaattgtgtggctcagattaaaagctccatctaaa 4908428  T
Q  195 attaattacacatgatttattttcttcttttttcttgcgtctccttc 241  Q
    ||||||||||||||||||  || ||||||| || | |||||||||||    
T  4908429 attaattacacatgattttcttccttctttcttttcgcgtctccttc 4908475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 10470096 - 10470178
Alignment:
Q  129 gatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgatt 211  Q
    |||||||||||||||||||||||||||||| ||||||   || |||||||||||| | |||||  |||| ||| |||||||||    
T  10470096 gatgagaggactcattaatagccattagattaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgatt 10470178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 43511068 - 43511150
Alignment:
Q  129 gatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgatt 211  Q
    |||||||||||||||||||||||||||||||||||||   || || ||||||||| | |||||  |||| ||| |||||||||    
T  43511068 gatgagaggactcattaatagccattagatcaaattgaacggatctgattaaaagcttcatataaaattgattgcacatgatt 43511150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 25593368 - 25593409
Alignment:
Q  96 tgtatcaagtgagaggagtgtcttatggtgagagatgagagga 138  Q
    ||||||||||||||||||| | |||||||||||||||||||||    
T  25593368 tgtatcaagtgagaggagtat-ttatggtgagagatgagagga 25593409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 4084001 - 4084040
Alignment:
Q  98 tatcaagtgagaggagtgtcttatggtgagagatgagagga 138  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  4084001 tatcaagtgagaggagtct-ttatggtgagagatgagagga 4084040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 17891 - 17805
Alignment:
Q  125 gagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgatt 211  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  || |||||||||||| || ||||  ||||||||||||||||||    
T  17891 gagagatgagaggactcattagtagcctttagatcaaattgtacggatcagattaaaagctcgatataaaattaattacacatgatt 17805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 5578876 - 5578792
Alignment:
Q  128 agatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccat-atttaattaattacacatgatt 211  Q
    |||||||| ||||||||||||| |||||||| ||||| |||||||||||||||||| ||||| ||  | ||||||||||||||||    
T  5578876 agatgagaagactcattaatagacattagattaaattatgtggctcagattaaaagctccatgataaatttaattacacatgatt 5578792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 53833283 - 53833242
Alignment:
Q  123 gtgagagatgagaggactcattaatagccattagatcaaatt 164  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  53833283 gtgagagatgagaggactcattaatagccattaaattaaatt 53833242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 45432975 - 45432893
Alignment:
Q  129 gatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgatt 211  Q
    |||||||||||||||||||||| ||||||||||||||  ||| |||||||||||| | |||||  |||| ||| |||||||||    
T  45432975 gatgagaggactcattaatagctattagatcaaattgaatggatcagattaaaagcttcatataaaattgattgcacatgatt 45432893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 8452 - 8415
Alignment:
Q  129 gatgagaggactcattaatagccattagatcaaattgt 166  Q
    |||||||||||||||||||| |||||||||||||||||    
T  8452 gatgagaggactcattaataaccattagatcaaattgt 8415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University